Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013218 (lamB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013218 showshow history
Names
lamB malL malB JW3996 ECK4028 b4036
Product
maltose outer membrane porin (maltoporin)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4247971 4249311 1341 447
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003192 (IPR003192 Porin, LamB-type) Apr 2008
Automated Process Approved PF02264 (PF02264 LamB porin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0034219 carbohydrate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003192
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003192
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lamB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3996 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym malL Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym malB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4028 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4036 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product maltose outer membrane porin (maltoporin) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name maltoporin, high-affinity receptor for maltose and maltoseoligosaccharides; phage lambda receptor Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phage lambda receptor protein; maltose high-affinity receptor Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR003192 Porin, LamB-type Protein Sequence Similarity - InterPro Domain: IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02264 LamB porin Protein Sequence Similarity - PFAM Model Name: PF02264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B.3 (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily); The Sugar Porin (SP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 8.1 (extrachromosomal; prophage genes and phage related functions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.114 (transport; substrate; maltose/maltodextrin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10528 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013218 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P02943 Published Annotation - Swiss-Prot Accession Number: P02943 Jan 2005
Automated Process Approved db xref GeneID:948548 Published Annotation - Entrez Gene Database ID: 948548
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790469 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02943 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function IS, phage, Tn; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phage lambda receptor protein; maltose high-affinity receptor; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77006.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0034219 carbohydrate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003192
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003192
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002111 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002163 lamB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002227 lamB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002003 lamB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002242 lamB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000298 lamB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003920 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004186 lamB_2 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018200 ganL CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000556 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002007 malB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006270 malB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004305 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006943 malB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004100 lamB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004796 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010161 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006177 malB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007718 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081214 lamB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004697 lamB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005228 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006119 malB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006575 malB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004646 lamB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009025 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003072 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008845 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007358 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007005 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008933 malB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010347 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007020 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008163 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007134 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005714 malB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006484 malB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006071 malB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004984 malB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029211 lamB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006986 lamB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008965 malB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004624 lamB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003732 lamB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004122 lamB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004824 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004744 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004642 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004658 lamB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178772 lamB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004427 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004490 malB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135131 lamB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003281 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004615 lamB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003242 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001078 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004475 lamB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002664 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003852 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001078 lamB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001267 lamB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002833 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001976 lamB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002247 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007491 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001931 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287841 lamB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008134 malL CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137813 lamB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008650 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003607 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004841 lamB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008864 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013217 lamB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012487 lamB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007869 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008928 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007332 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003968 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005709 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008036 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008919 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008225 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004084 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004043 lamB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005237 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004269 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007702 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008487 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008501 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114374 lamB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085864 lamB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005093 lamB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103019 lamB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004918 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007587 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005748 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001368 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074768 lamB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090380 lamB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004438 lamB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004579 lamB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003095 lamB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007711 lamB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002265 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011102 lamB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003365 lamB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003055 lamB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003710 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241655 lamB1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008035 lamB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000042 lamB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007524 lamB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003662 lamB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127744 lamB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008548 lamB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008279 lamB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003420 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009208 lamB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008222 lamB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029615 lamB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006299 lamB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000039 lamB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000219 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007500 lamB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004248 lamB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003754 lamB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004560 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000442 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000576 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000588 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22912mutantTn5 InsertionRequest the StrainABE-0013218lamBlamB::Tn5(KAN-I-SceI) at position 521 in Plus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4242971 to 4254311
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013193malGCDScomplement42426264243516Upstream
ABE-0013195malFCDScomplement42435314245075Upstream
ABE-0285668repeat_regionforward42450924245217Upstream
ABE-0013200malECDScomplement42452294246419Upstream
ABE-0013216malKCDSforward42467844247899Upstream
ABE-0013218lamBCDSforward42479714249311Matches
ABE-0285669repeat_regionforward42493214249445Downstream
ABE-0013221malMCDSforward42495544250474Downstream
ABE-0013224yjbIpseudogeneforward42507034252283Downstream
ABE-0013227ubiCCDSforward42525064253003Downstream
ABE-0013229ubiACDSforward42530164253888Downstream
ABE-0285670repeat_regionforward42539014254030Downstream
ABE-0013232plsBCDScomplement42540434256466Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.