Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013227 (ubiC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013227 showshow history
Names
ubiC sdgG? JW5713 ECK4031 b4039
Product
chorismate pyruvate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4252506 4253003 498 166
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001570
EnteroFam0013227: Trusted threshold=421.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007440 (IPR007440 Chorismate--pyruvate lyase) Apr 2008
Automated Process Approved IPR028978 (IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily) Jul 2018
Automated Process Approved PF04345 (PF04345 Chorismate lyase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007440
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008813 chorismate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007440
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ubiC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5713 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sdgG? Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4031 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4039 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product chorismate pyruvate lyase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name chorismate--pyruvate lyase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name chorismate lyase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013227: Trusted threshold=421.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001570
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04345 Chorismate lyase Protein Sequence Similarity - PFAM Model Name: PF04345
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Protein Sequence Similarity - InterPro Domain: IPR028978
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007440 Chorismate--pyruvate lyase Protein Sequence Similarity - InterPro Domain: IPR007440
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.3.- Published Annotation - Swiss-Prot Accession Number: P26602
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated EC number 4.1.3.40 Published Annotation - Database Name: EC2GO: GO:0008813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26602 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P26602 Published Annotation - Swiss-Prot Accession Number: P26602 Jan 2005
Automated Process Approved db xref ASAP:ABE-0013227 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11369 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948545 Published Annotation - Entrez Gene Database ID: 948545
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082361 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note chorismate lyase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77009.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007440
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008813 chorismate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007440
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001570 ubiC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001289 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000890 ubiC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001158 ubiC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000322 ubiC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000854 ubiC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000300 ubiC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003918 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004184 ubiC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000220 ubiC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008617 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018671 ubiC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000560 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000558 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296866 ubiC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003560 ubiC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003210 ubiC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002004 ubiC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006276 ubiC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004307 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006936 ubiC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004102 ubiC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004793 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010157 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006181 ubiC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007713 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081217 ubiC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004702 ubiC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006124 ubiC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006579 ubiC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004650 ubiC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009029 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003075 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008848 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007361 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007008 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008930 ubiC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010350 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007023 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008166 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007137 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005717 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006487 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006068 ubiC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004987 ubiC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029214 ubiC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006990 ubiC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008968 ubiC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004628 ubiC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003735 ubiC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004125 ubiC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004820 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004748 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004638 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004661 ubiC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178774 ubiC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004431 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004493 ubiC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135134 ubiC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003284 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004618 ubiC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003306 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004477 ubiC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002666 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008409 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003368 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002368 ubiC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003506 ubiC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000482 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000274 ubiC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004110 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008053 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003780 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288887 ubiC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007268 ubiC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060850 ubiC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004256 ubiC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002493 ubiC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000944 ubiC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005056 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146754 ubiC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008652 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003605 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004843 ubiC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008866 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013224 ubiC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012494 ubiC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007867 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008930 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007334 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003970 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005711 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008038 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008921 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008227 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004086 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004045 ubiC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005241 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004271 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007700 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008489 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008503 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114377 ubiC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085866 ubiC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005096 ubiC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103025 ubiC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004916 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007585 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005750 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001373 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263670 CDS
Person Approved Go view Shigella boydii 227 ADV-0004436 ubiC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009977 ubiC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004595 ubiC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005140 ubiC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074772 ubiC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090378 ubiC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004433 ubiC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004584 ubiC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003093 ubiC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007062 ubiC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002263 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011096 ubiC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003362 ubiC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003052 ubiC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002662 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235292 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004783 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004740 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007978 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002997 ubiC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116362 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006776 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006976 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001183 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005602 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007430 ubiC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030193 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004823 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004038 ubiC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004398 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008778 ubiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007801 ubiC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000397 ubiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000460 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004582 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000582 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000586 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21620mutantTn5 InsertionRequest the StrainABE-0013227ubiCubiC::Tn5KAN-I-SceI at position 91 in Minus orientation ,- pKD465Blattner Laboratory
FB21621mutantTn5 InsertionRequest the StrainABE-0013227ubiCubiC::Tn5KAN-I-SceI at position 91 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4247506 to 4258003
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013216malKCDSforward42467844247899Upstream
ABE-0013218lamBCDSforward42479714249311Upstream
ABE-0285669repeat_regionforward42493214249445Upstream
ABE-0013221malMCDSforward42495544250474Upstream
ABE-0013224yjbIpseudogeneforward42507034252283Upstream
ABE-0013227ubiCCDSforward42525064253003Matches
ABE-0013229ubiACDSforward42530164253888Downstream
ABE-0285670repeat_regionforward42539014254030Downstream
ABE-0013232plsBCDScomplement42540434256466Downstream
ABE-0013235dgkACDSforward42566374257005Downstream
ABE-0013241lexACDSforward42571154257723Downstream
ABE-0013243dinFCDSforward42577424259121Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.