Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013229 (ubiA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013229 showshow history
Names
ubiA sdgG? cyr JW4000 ECK4032 b4040
Product
p-hydroxybenzoate octaprenyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4253016 4253888 873 291
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001571
EnteroFam0013229: Trusted threshold=732; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000537 (IPR000537 UbiA prenyltransferase family) Apr 2008
Automated Process Approved IPR006370 (IPR006370 4-hydroxybenzoate polyprenyltransferase-like) Apr 2008
Automated Process Approved PF01040 (PF01040 UbiA prenyltransferase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006370
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ubiA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW4000 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4032 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cyr Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym sdgG? Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4040 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product p-hydroxybenzoate octaprenyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 4-hydroxybenzoate-octaprenyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name p-hydroxybenzoate octaprenyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013229: Trusted threshold=732; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001571
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01040 UbiA prenyltransferase family Protein Sequence Similarity - PFAM Model Name: PF01040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006370 4-hydroxybenzoate polyprenyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR006370
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000537 UbiA prenyltransferase family Protein Sequence Similarity - InterPro Domain: IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.5.-.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.5.1.- Published Annotation - Swiss-Prot Accession Number: P0AGK1 Feb 2006
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013229 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGK1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790473 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11370 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948540 Published Annotation - Entrez Gene Database ID: 948540
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AGK1 Published Annotation - Swiss-Prot Accession Number: P0AGK1 Jan 2006
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 4-hydroxybenzoate-octaprenyltransferase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77010.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006370
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001571 ubiA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001290 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000476 ubiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000492 ubiA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001328 ubiA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000585 ubiA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000323 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004190 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000301 ubiA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003917 ubiA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004183 ubiA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000219 ubiA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008616 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018672 ubiA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000561 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000559 ubiA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296868 ubiA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003559 ubiA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003209 ubiA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002003 ubiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006277 ubiA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004308 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006935 ubiA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004103 ubiA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004792 ubiA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010156 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006182 ubiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007712 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081218 ubiA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004703 ubiA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005236 ubiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006125 ubiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006580 ubiA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004651 ubiA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009030 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003076 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008849 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007362 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007009 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008929 ubiA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010351 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007024 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008167 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007138 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005718 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006488 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006067 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004988 ubiA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029215 ubiA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006991 ubiA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008969 ubiA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004629 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003736 ubiA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004126 ubiA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004819 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004749 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004637 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004662 ubiA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178775 ubiA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004432 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004494 ubiA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135135 ubiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003285 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004619 ubiA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003305 ubiA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001081 ubiA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004478 ubiA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002667 ubiA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008408 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003369 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002367 ubiA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003507 ubiA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000481 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000275 ubiA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004109 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008054 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003781 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288888 ubiA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007269 ubiA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060851 ubiA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000340 ubiA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000156 ubiA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000945 ubiA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005057 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146752 ubiA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005561 ubiA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008653 ubiA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003604 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004844 ubiA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008867 ubiA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013226 ubiA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012496 ubiA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007866 ubiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008931 ubiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007335 ubiA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003971 ubiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005712 ubiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008039 ubiA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008922 ubiA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008228 ubiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004087 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004046 ubiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005242 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004272 ubiA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007699 ubiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008490 ubiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008504 ubiA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114378 ubiA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085867 ubiA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005097 ubiA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103028 ubiA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004915 ubiA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007584 ubiA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005751 ubiA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001374 ubiA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264019 ubiA CDS
Person Approved Go view Shigella boydii 227 ADV-0004435 ubiA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009976 ubiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004596 ubiA CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005139 ubiA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074773 ubiA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090377 ubiA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004432 ubiA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004585 ubiA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003092 ubiA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000101 VC0094 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000282 ubiA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007060 ubiA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002262 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011092 b4040 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003361 ubiA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003051 ubiA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002661 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235294 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004784 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004739 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007977 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002996 ubiA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116363 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006775 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006975 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001184 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005603 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007431 ubiA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030194 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004822 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004037 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004397 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008779 ubiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007800 ubiA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000398 ubiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000461 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004581 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000584 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000585 ubiA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4248016 to 4258888
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013218lamBCDSforward42479714249311Upstream
ABE-0285669repeat_regionforward42493214249445Upstream
ABE-0013221malMCDSforward42495544250474Upstream
ABE-0013224yjbIpseudogeneforward42507034252283Upstream
ABE-0013227ubiCCDSforward42525064253003Upstream
ABE-0013229ubiACDSforward42530164253888Matches
ABE-0285670repeat_regionforward42539014254030Downstream
ABE-0013232plsBCDScomplement42540434256466Downstream
ABE-0013235dgkACDSforward42566374257005Downstream
ABE-0013241lexACDSforward42571154257723Downstream
ABE-0013243dinFCDSforward42577424259121Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.