Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013232 (plsB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013232 showshow history
Names
plsB JW4001 ECK4033 b4041
Product
glycerol-3-phosphate O-acyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4254043 4256466 2424 808
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001572
EnteroFam0013232: Trusted threshold=2199.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012082 (IPR012082 (DEPRECATED) Glycerol-3-phosphate O-acyltransferase/dihydroxyacetone phosphate acyltransferase) Apr 2008
Automated Process Approved IPR012124 (IPR012124 (DEPRECATED) Glycerol-3-phosphate acyltransferase) Apr 2008
Automated Process Approved IPR002123 (IPR002123 Phospholipid/glycerol acyltransferase) Apr 2008
Automated Process Approved IPR028354 (IPR028354 Glycerol-3-phosphate acyltransferase, PlsB) Jul 2018
Automated Process Approved IPR022284 (IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase) Jul 2018
Automated Process Approved PF01553 (PF01553 Acyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044255 cellular lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028354
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008374 O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016746 acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002123
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004366 glycerol-3-phosphate O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name plsB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW4001 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4033 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4041 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycerol-3-phosphate O-acyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glycerol-3-phosphate acyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name glycerolphosphate acyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013232: Trusted threshold=2199.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001572
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase Protein Sequence Similarity - InterPro Domain: IPR022284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01553 Acyltransferase Protein Sequence Similarity - PFAM Model Name: PF01553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028354 Glycerol-3-phosphate acyltransferase, PlsB Protein Sequence Similarity - InterPro Domain: IPR028354
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002123 Phospholipid/glycerol acyltransferase Protein Sequence Similarity - InterPro Domain: IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012082 (DEPRECATED) Glycerol-3-phosphate O-acyltransferase/dihydroxyacetone phosphate acyltransferase Protein Sequence Similarity - InterPro Domain: IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012124 (DEPRECATED) Glycerol-3-phosphate acyltransferase Protein Sequence Similarity - InterPro Domain: IPR012124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.3.1.- Published Annotation - Database Name: EC2GO: GO:0008374
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.3.1.15 Published Annotation - Swiss-Prot Accession Number: P0A7A7 Feb 2006
Automated Process Uncurated EC number 2.3.-.- Published Annotation - Database Name: EC2GO: GO:0016746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948541 Published Annotation - Entrez Gene Database ID: 948541
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7A7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10740 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7A7 Published Annotation - Swiss-Prot Accession Number: P0A7A7 Jan 2006
Person Approved function enzyme; Macromolecule synthesis, modification: Phospholipids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glycerol-3-phosphate acyltransferase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77011.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044255 cellular lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028354
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016746 acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002123
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008374 O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004366 glycerol-3-phosphate O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001572 plsB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001291 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001500 plsB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001109 plsB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000150 plsB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000584 plsB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000322 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004191 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000302 plsB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003916 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004182 plsB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000218 plsB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008615 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018673 plsB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000562 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000560 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296873 plsB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003558 plsB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003208 plsB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002001 plsB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006278 plsB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006934 plsB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004104 plsB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004791 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010155 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006183 plsB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007711 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081219 plsB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004704 plsB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005237 plsB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006126 plsB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006581 plsB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004652 plsB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009031 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003077 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008850 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007363 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007010 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008928 plsB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010352 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007025 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008168 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007139 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005719 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006489 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006066 plsB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004989 plsB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029216 plsB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006992 plsB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008970 plsB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004630 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003737 plsB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004127 plsB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004818 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004750 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004636 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004663 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178776 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004433 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004495 plsB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135136 plsB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003286 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004620 plsB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003304 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001082 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004479 plsB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002668 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008407 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003370 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002366 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003508 plsB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000480 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000276 plsB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004108 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008055 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003782 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288889 plsB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007270 plsB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060852 plsB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004257 plsB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003347 plsB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000946 plsB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005058 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146750 plsB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001550 plsB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008654 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003603 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004845 plsB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008868 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013230 plsB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012500 plsB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007865 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008932 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007336 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003972 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005713 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008040 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008923 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008229 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004088 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004047 plsB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005243 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004273 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007698 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008491 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008505 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114381 plsB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085868 plsB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005098 plsB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103030 plsB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004914 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007583 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005752 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001375 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268262 plsB CDS
Person Approved Go view Shigella boydii 227 ADV-0004434 plsB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009975 plsB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004597 plsB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005138 plsB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074775 plsB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090376 plsB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004431 plsB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004586 plsB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003091 plsB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000100 VC0093 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000283 plsB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007057 plsB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002261 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011090 b4041 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003360 pslB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003050 plsB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002660 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235302 plsB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004738 plsB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002995 plsB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116373 plsB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001185 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030195 plsB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004036 plsB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004396 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007799 plsB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000399 plsB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000462 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004580 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000586 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000584 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21622mutantTn5 InsertionRequest the StrainABE-0013232plsBplsB::Tn5KAN-I-SceI at position 2192 in Minus orientation ,- pKD465Blattner Laboratory
FB21623mutantTn5 InsertionRequest the StrainABE-0013232plsBplsB::Tn5KAN-I-SceI at position 2192 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4249043 to 4261466
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013218lamBCDSforward42479714249311Downstream
ABE-0285669repeat_regionforward42493214249445Downstream
ABE-0013221malMCDSforward42495544250474Downstream
ABE-0013224yjbIpseudogeneforward42507034252283Downstream
ABE-0013227ubiCCDSforward42525064253003Downstream
ABE-0013229ubiACDSforward42530164253888Downstream
ABE-0285670repeat_regionforward42539014254030Downstream
ABE-0013232plsBCDScomplement42540434256466Matches
ABE-0013235dgkACDSforward42566374257005Upstream
ABE-0013241lexACDSforward42571154257723Upstream
ABE-0013243dinFCDSforward42577424259121Upstream
ABE-0013247yjbJCDSforward42592374259446Upstream
ABE-0013249zurCDScomplement42594884260003Upstream
ABE-0013253yjbLCDSpforward42603214260575Upstream
ABE-0285160pseudogeneforward42603214261306Upstream
ABE-0013255yjbMCDSpforward42605994261306Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.