Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013235 (dgkA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013235 showshow history
Names
dgkA JW4002 ECK4034 b4042
Product
diacylglycerol kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4256637 4257005 369 123
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001573
EnteroFam0013235: Trusted threshold=274.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000829 (IPR000829 DAGK family) Apr 2008
Automated Process Approved IPR014380 (IPR014380 (DEPRECATED) Diacylglycerol kinase, proteobacteria) Apr 2008
Automated Process Approved PF01219 (PF01219 Prokaryotic diacylglycerol kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004143 diacylglycerol kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dgkA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4034 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4002 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4042 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product diacylglycerol kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name diacylglycerol kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013235: Trusted threshold=274.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001573
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01219 Prokaryotic diacylglycerol kinase Protein Sequence Similarity - PFAM Model Name: PF01219
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014380 (DEPRECATED) Diacylglycerol kinase, proteobacteria Protein Sequence Similarity - InterPro Domain: IPR014380
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000829 DAGK family Protein Sequence Similarity - InterPro Domain: IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.107 Published Annotation - Swiss-Prot Accession Number: P0ABN1 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790475 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948543 Published Annotation - Entrez Gene Database ID: 948543
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABN1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013235 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABN1 Published Annotation - Swiss-Prot Accession Number: P0ABN1 Jan 2006
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77012.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004143 diacylglycerol kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001573 dgkA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001292 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001137 dgkA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000741 dgkA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000354 dgkA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000853 dgkA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000303 dgkA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003915 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004181 dgkA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000217 dgkA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008614 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018675 dgkA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000563 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000561 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296876 dgkA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003557 dgkA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003207 dgkA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002000 dgkA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006279 dgkA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004311 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006933 dgkA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004105 dgkA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004790 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010154 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006184 dgkA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007710 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081221 dgkA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004705 dgkA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005238 dgkA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006127 dgkA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006582 dgkA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004653 dgkA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009032 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003078 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008851 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007364 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007011 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008927 dgkA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010353 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007026 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008169 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007140 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005720 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006490 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006065 dgkA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004990 dgkA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029217 dgkA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006993 dgkA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008971 dgkA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004631 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003738 dgkA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004128 dgkA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004817 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004751 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004635 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004665 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178777 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004434 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004496 dgkA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135137 dgkA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003287 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004621 dgkA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003303 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001083 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004480 dgkA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002669 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008406 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003371 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002365 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003509 dgkA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000479 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000277 dgkA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004107 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008056 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288890 dgkA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007271 dgkA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060853 dgkA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000334 dgkA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001344 dgkA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000947 dgkA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005059 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146747 dgkA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004098 dgkA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008655 dgkA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003602 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004846 dgkA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008869 dgkA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013232 dgkA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012502 dgkA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007864 dgkA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008933 dgkA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007337 dgkA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003973 dgkA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005714 dgkA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008041 dgkA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008924 dgkA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008230 dgkA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004089 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004048 dgkA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005244 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004274 dgkA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007697 dgkA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008492 dgkA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008506 dgkA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114383 dgkA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085869 dgkA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005099 dgkA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103034 dgkA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004913 dgkA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007582 dgkA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005753 dgkA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001376 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265784 dgkA CDS
Person Approved Go view Shigella boydii 227 ADV-0004433 dgkA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009974 dgkA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004598 dgkA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005137 dgkA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074776 dgkA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090375 dgkA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004430 dgkA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004587 dgkA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003090 dgkA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003604 VCA0714 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007054 dgkA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002260 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011086 b4042 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003359 b4042 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003049 dgkA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002659 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235303 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005408 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004737 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007975 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002994 dgkA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116375 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006773 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006973 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001186 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005605 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007433 dgkA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030196 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004820 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004035 dgkA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004395 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008781 dgkA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007798 dgkA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000400 dgkA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000463 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004579 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000590 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000583 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21624mutantTn5 InsertionRequest the StrainABE-0013235dgkAdgkA::Tn5KAN-I-SceI at position 114 in Minus orientation ,+ pKD460Blattner Laboratory
FB21625mutantTn5 InsertionRequest the StrainABE-0013235dgkAdgkA::Tn5KAN-I-SceI at position 114 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4251637 to 4262005
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013224yjbIpseudogeneforward42507034252283Upstream
ABE-0013227ubiCCDSforward42525064253003Upstream
ABE-0013229ubiACDSforward42530164253888Upstream
ABE-0285670repeat_regionforward42539014254030Upstream
ABE-0013232plsBCDScomplement42540434256466Upstream
ABE-0013235dgkACDSforward42566374257005Matches
ABE-0013241lexACDSforward42571154257723Downstream
ABE-0013243dinFCDSforward42577424259121Downstream
ABE-0013247yjbJCDSforward42592374259446Downstream
ABE-0013249zurCDScomplement42594884260003Downstream
ABE-0013253yjbLCDSpforward42603214260575Downstream
ABE-0285160pseudogeneforward42603214261306Downstream
ABE-0013255yjbMCDSpforward42605994261306Downstream
ABE-0013258dusACDSforward42616694262706Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.