Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013272 (alr) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013272 showshow history
Names
alr JW4013 ECK4045 b4053
Product
alanine racemase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4265782 4266861 1080 360
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001578
EnteroFam0013272: Trusted threshold=930.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000821 (IPR000821 Alanine racemase) Apr 2008
Automated Process Approved IPR009006 (IPR009006 Alanine racemase/group IV decarboxylase, C-terminal) Apr 2008
Automated Process Approved IPR001608 (IPR001608 Alanine racemase, N-terminal) Apr 2008
Automated Process Approved IPR011079 (IPR011079 Alanine racemase, C-terminal) Apr 2008
Automated Process Approved IPR012155 (IPR012155 (DEPRECATED) Alanine racemase) Apr 2008
Automated Process Approved IPR029066 (IPR029066 PLP-binding barrel) Jul 2018
Automated Process Approved PF00842 (PF00842 Alanine racemase, C-terminal domain) Jul 2018
Automated Process Approved PF01168 (PF01168 Alanine racemase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009006
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name alr Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4045 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4013 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4053 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product alanine racemase 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name alanine racemase 1, PLP-binding, biosynthetic Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013272: Trusted threshold=930.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001578
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000821 Alanine racemase Protein Sequence Similarity - InterPro Domain: IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009006
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012155 (DEPRECATED) Alanine racemase Protein Sequence Similarity - InterPro Domain: IPR012155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029066 PLP-binding barrel Protein Sequence Similarity - InterPro Domain: IPR029066
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011079 Alanine racemase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00842 Alanine racemase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00842
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01168 Alanine racemase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF01168
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001608 Alanine racemase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001608
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.1.1.1 Published Annotation - Swiss-Prot Accession Number: P0A6B4 Feb 2006
Person Uncurated MultiFun 1.5.1.17 (metabolism; building block biosynthesis; amino acids; alanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6B4 Published Annotation - Swiss-Prot Accession Number: P0A6B4 Jan 2006
Automated Process Approved db xref GeneID:948564 Published Annotation - Entrez Gene Database ID: 948564
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790487 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6B4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013272 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10001 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Alanine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note alanine racemase 1; GO_process: GO:0006523 - alanine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77023.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009006
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001578 alr CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001734 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001841 alr CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001857 alr CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000259 alr CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001987 alr CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003199 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003842 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000314 alr CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003905 alr CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004171 alr CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000207 alr CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005216 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019770 alr CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003521 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000572 alr CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001990 alr2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006328 alr2 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004321 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006921 alr CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004118 alr CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004776 alr CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010142 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006258 alr2 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009250 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081236 alr CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004716 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005316 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006139 alr2 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006594 alr2 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004662 alr CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009042 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003107 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008883 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007396 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007041 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006282 alr2 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010385 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007057 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008201 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007171 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005753 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006500 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006033 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005022 alr2 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029227 alr CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007003 alr CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008982 alr2 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004645 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003749 alr CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004139 alr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004807 alr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004762 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004624 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004680 alr CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178854 alr CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004446 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004506 alr2 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135147 alr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003297 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004635 alr CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003286 alr CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001104 alr CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004490 alr CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002681 alr CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005213 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063980 alr CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002100 alr CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002126 alr CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000873 alr CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008684 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146714 alr CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008666 alr CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003591 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004858 alr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008880 alr CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013266 alr CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012534 alr CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007853 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008944 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007348 alr CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003984 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005725 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008052 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008935 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008241 alr CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004100 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004059 alr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005256 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004285 alr CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007686 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008558 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006249 alr CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114407 alr CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085880 alr CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005111 alr CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103067 alr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004902 alr CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007570 alr CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005764 alr CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001388 alr CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267559 alr CDS
Person Approved Go view Shigella boydii 227 ADV-0004422 alr CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009961 alr2 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004611 alr2 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005124 alr CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074786 alr CDS
Person Approved Go view Shigella flexneri 301 ABT-0090364 alr CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004419 alr CDS
Person Approved Go view Shigella sonnei 046 ADD-0004598 alr CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003080 alr CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000405 VC0372 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007021 alr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003685 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011065 alr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003351 alr CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001472 alr CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002651 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235315 alr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004859 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004729 alr CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007968 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002987 alr CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116400 alr CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006766 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006966 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001600 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005612 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007440 alr2 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030203 alr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004813 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004027 alr CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004387 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008788 alr2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007791 alr2 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000407 alr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000471 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004571 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000633 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000573 alr CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22913mutantTn5 InsertionRequest the StrainABE-0013272alralr::Tn5(KAN-I-SceI) at position 185 in Plus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4260782 to 4271861
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285160pseudogeneforward42603214261306Upstream
ABE-0013255yjbMCDSpforward42605994261306Upstream
ABE-0013258dusACDSforward42616694262706Upstream
ABE-0013260pspGCDSforward42628404263082Upstream
ABE-0285769pspHncRNAforward42631394263250Upstream
ABE-0013262qorACDScomplement42632484264231Upstream
ABE-0013269dnaBCDSforward42643144265729Upstream
ABE-0013272alrCDSforward42657824266861Matches
ABE-0285671repeat_regionforward42668884266984Downstream
ABE-0013278tyrBCDSforward42671144268307Downstream
ABE-0285672repeat_regionforward42683174268340Downstream
ABE-0285200yjbSCDScomplement42688094269012Downstream
ABE-0013283aphACDSforward42694144270127Downstream
ABE-0013286yjbQCDSforward42702384270654Downstream
ABE-0013288yjbRCDSforward42706584271014Downstream
ABE-0013290uvrACDScomplement42710494273871Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.