Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013278 (tyrB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013278 showshow history
Names
tyrB JW4014 ECK4046 b4054
Product
tyrosine aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4267114 4268307 1194 398
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001579
EnteroFam0013278: Trusted threshold=1056.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR000796 (IPR000796 Aspartate/other aminotransferase) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR004838 (IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site) Apr 2008
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004838
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006571 tyrosine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tyrB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4046 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4014 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4054 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product tyrosine aminotransferase Published Annotation - EcoCyc Accession Number: EG11040
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name tyrosine aminotransferase, tyrosine-repressible, PLP-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name tyrosine aminotransferase, tyrosine repressible Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name aromatic-amino-acid aminotransferase Published Annotation - Swiss-Prot Accession Number: P04693
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0013278: Trusted threshold=1056.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001579
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Protein Sequence Similarity - InterPro Domain: IPR004838
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000796 Aspartate/other aminotransferase Protein Sequence Similarity - InterPro Domain: IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.6.1.57 Published Annotation - Swiss-Prot Accession Number: P04693 Feb 2006
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.14 (metabolism; building block biosynthesis; amino acids; tyrosine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.13 (metabolism; building block biosynthesis; amino acids; phenylalanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04693 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790488 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P04693 Published Annotation - Swiss-Prot Accession Number: P04693 Jan 2005
Automated Process Approved db xref GeneID:948563 Published Annotation - Entrez Gene Database ID: 948563
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0013278 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11040 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Tyrosine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tyrosine aminotransferase, tyrosine repressible; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009094 - L-phenylalanine biosynthetic process; GO_process: GO:0006571 - tyrosine biosynthetic process; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77024.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004838
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006571 tyrosine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001579 tyrB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001733 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000792 tyrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000796 tyrB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000258 tyrB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000421 tyrB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003196 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003838 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000315 tyrB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003904 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004170 tyrB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000206 tyrB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005207 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019779 tyrB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003527 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000573 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296961 tyrB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003527 tyrB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003196 tyrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001989 tyrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006330 tyrB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004324 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006919 tyrB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004121 tyrB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004773 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010141 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006260 tyrB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009249 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081239 tyrB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004718 tyrB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005318 tyrB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006141 tyrB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006596 tyrB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004665 tyrB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009043 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003108 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008884 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007397 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007042 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006281 tyrB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010386 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007058 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008202 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007172 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005754 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006501 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006032 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005023 tyrB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029228 tyrB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007006 tyrB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008983 tyrB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003750 tyrB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004140 tyrB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004806 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004763 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004623 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178857 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004447 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004507 tyrB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135148 tyrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003298 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004638 tyrB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003283 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000010 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004491 tyrB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002682 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005206 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003383 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002353 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003521 tyrB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000466 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000289 tyrB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004095 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008068 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003795 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288903 tyrB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007283 tyrB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063985 tyrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002083 tyrB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002128 tyrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003088 tyrB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008689 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146711 tyrB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005417 tyrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008667 tyrB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003590 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004859 tyrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008882 tyrB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013270 tyrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012538 tyrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007851 tyrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008946 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007350 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003985 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005726 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008053 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008937 tyrB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008243 tyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004101 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004060 tyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005258 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004287 tyrB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007684 tyrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008560 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006251 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114411 tyrB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085881 tyrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005112 tyrB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103074 tyrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004900 tyrB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007569 tyrB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005766 tyrB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001392 CDS
Person Approved Go view Shigella boydii 227 ADV-0004421 tyrB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009960 tyrB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004612 tyrB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005123 tyrB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074788 tyrB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090363 tyrB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004418 tyrB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004599 tyrB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007020 tyrB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003686 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011062 tyrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003350 tyrB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001471 tyrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002650 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235316 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004858 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004728 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007967 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002986 tyrB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116404 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006765 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006965 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003412 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005613 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007441 tyrB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030204 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004812 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004026 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004386 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008789 tyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007790 tyrB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000408 tyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000472 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004570 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000659 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000572 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21632mutantTn5 InsertionRequest the StrainABE-0013278tyrBtyrB::Tn5KAN-I-SceI at position 309 in Minus orientation ,+ pKD460Blattner Laboratory
FB21633mutantTn5 InsertionRequest the StrainABE-0013278tyrBtyrB::Tn5KAN-I-SceI at position 309 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4262114 to 4273307
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013258dusACDSforward42616694262706Upstream
ABE-0013260pspGCDSforward42628404263082Upstream
ABE-0285769pspHncRNAforward42631394263250Upstream
ABE-0013262qorACDScomplement42632484264231Upstream
ABE-0013269dnaBCDSforward42643144265729Upstream
ABE-0013272alrCDSforward42657824266861Upstream
ABE-0285671repeat_regionforward42668884266984Upstream
ABE-0013278tyrBCDSforward42671144268307Matches
ABE-0285672repeat_regionforward42683174268340Downstream
ABE-0285200yjbSCDScomplement42688094269012Downstream
ABE-0013283aphACDSforward42694144270127Downstream
ABE-0013286yjbQCDSforward42702384270654Downstream
ABE-0013288yjbRCDSforward42706584271014Downstream
ABE-0013290uvrACDScomplement42710494273871Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.