Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013319 (ghxP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013319 showshow history
Names
ghxP JW4025 ECK4057 yjcD b4064
Product
guanine/hypoxanthine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4278479 4279828 1350 450
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Apr 2008
Automated Process Approved PF00860 (PF00860 Permease family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ghxP Published Annotation - PubMed ID: 24214977
Reference: Escherichia coli K-12 		Aug 2018
Person Approved synonym ECK4057 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4025 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjcD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b4064 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product guanine/hypoxanthine transporter Published Annotation - EcoCyc Accession Number: EG11939
Reference: Escherichia coli K-12 MG1655 		Aug 2018
Person Uncurated alternate product name predicted permease Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Aug 2018
Person Uncurated alternate product name putative membrane protein Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name high affinity guanine/hypoxanthine permease Experimental - PubMed ID: 24214977
Reference: Escherichia coli K-12 		Aug 2018
Protein Family
Automated Process Approved protein family PF00860 Permease family Protein Sequence Similarity - PFAM Model Name: PF00860
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790499 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AF52 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11939 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948565 Published Annotation - Entrez Gene Database ID: 948565
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0013319 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AF52 Published Annotation - Swiss-Prot Accession Number: P0AF52 Jan 2006
Automated Process Approved protein id AAC77034.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264801 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000121 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000058 yjcD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000068 ghxP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000122 yjcD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000048 ghxP CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000335 yjcD CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004154 yjcD_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000195 yjcD CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018006 ghxP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004344 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004139 yjcD CDS
Person Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0005178 yjcD pseudogene
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010128 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081264 ghxP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004730 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005331 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004685 yjcD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009056 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010398 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029238 yjcD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007027 ghxP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008995 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004665 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003758 yjcD CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0004151 yjcD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004791 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004778 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004608 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004708 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178878 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004459 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004519 CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0135158 yjcD CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004660 yjcD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004078 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288912 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0114464 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010001 CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0005102 yjcD CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074801 yjcD CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0090338 yjcD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004406 yjcD CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0004612 yjcD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4273479 to 4284828
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013290uvrACDScomplement42710494273871Upstream
ABE-0013298ssbCDSforward42741254274661Upstream
ABE-0013300yjcBCDScomplement42747604275041Upstream
ABE-0013309pdeCCDSforward42754714277057Upstream
ABE-0013311soxSCDScomplement42770604277383Upstream
ABE-0013316soxRCDSforward42774694277933Upstream
ABE-0047277ryjAncRNAcomplement42779274278066Upstream
ABE-0013319ghxPCDSforward42784794279828Matches
ABE-0013323yjcECDSforward42799804281629Downstream
ABE-0013325yjcFCDScomplement42817834283075Downstream
ABE-0013328actPCDScomplement42832534284902Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.