Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013328 (actP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013328 showshow history
Names
actP phaJ JW4028 ECK4060 yjcG b4067
Product
acetate permease
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4283253 4284902 1650 550
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001583
EnteroFam0013328: Trusted threshold=1498.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014083 (IPR014083 Cation/acetate symporter ActP) Apr 2008
Automated Process Approved IPR001734 (IPR001734 Sodium/solute symporter) Apr 2008
Automated Process Approved PF00474 (PF00474 Sodium:solute symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0043879 glycolate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0015123 acetate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name actP Experimental - PubMed ID: 14563880
Reference: Escherichia coli 		Mar 2004
Person Approved synonym ECK4060 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym phaJ Published Annotation - GenBank Accession Number: BX936398
Reference: Yersinia pseudotuberculosis IP32953 		Sep 2007
Person Approved synonym JW4028 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjcG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Mar 2004
Person Approved locus tag b4067 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acetate permease Experimental - PubMed ID: 14563880
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name acetate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013328: Trusted threshold=1498.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001583
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00474 Sodium:solute symporter family Protein Sequence Similarity - PFAM Model Name: PF00474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014083 Cation/acetate symporter ActP Protein Sequence Similarity - InterPro Domain: IPR014083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001734 Sodium/solute symporter Protein Sequence Similarity - InterPro Domain: IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved MultiFun 4.2.A.21 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Solute:Sodium Symporter (SSS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790503 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11942 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32705 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013328 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948575 Published Annotation - Entrez Gene Database ID: 948575
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P32705 Published Annotation - Swiss-Prot Accession Number: P32705 Jan 2005
Automated Process Approved function 6.1 cell structure; membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 4.2.A.21 transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Solute:Sodium Symporter (SSS) Family Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.3 location of gene products; inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved note also transports glycolate with a rate high enough to support growth on this carbon source Experimental - PubMed ID: 14563880
Reference: Escherichia coli 		Mar 2004
Automated Process Approved note acetate permease; also transports glycolate with a rate high enough to support growth on this carbon source; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77037.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0043879 glycolate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0015123 acetate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001583 actP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002249 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001516 actP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001470 actP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001525 actP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001495 actP CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000341 actP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003876 actP CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004146 actP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000190 actP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008446 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018003 actP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000722 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000590 actP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297045 actP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003501 actP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003175 actP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001963 actP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006348 actP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004350 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004144 yjcG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004745 actP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010124 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006276 actP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009230 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081270 actP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004733 actP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005335 actP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006157 actP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006613 actP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004687 actP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009059 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003124 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008900 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007413 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007058 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006266 actP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010402 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007074 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008218 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007188 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005770 actP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006517 actP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006016 actP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005039 actP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029241 actP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007034 actP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008999 actP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004670 actP CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003761 actP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004154 actP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004788 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004781 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004605 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004714 actP CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178883 actP CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004462 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004521 actP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135161 actP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003315 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004666 yjcG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003943 actP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001039 actP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004526 actP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002704 actP CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008243 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003406 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002330 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003543 actP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000440 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000312 actP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004072 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008092 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003817 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288924 actP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007305 yjcG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061042 actP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000453 actP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000200 actP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001236 actP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005263 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136923 actP CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001654 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008695 actP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003562 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004886 actP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008907 actP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013375 yjcG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012639 yjcG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007824 actP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008972 actP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007377 actP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004011 actP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005753 actP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008080 actP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008964 actP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008269 actP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004126 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004085 actP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005292 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004315 actP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007472 actP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008589 actP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006278 actP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114474 actP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085906 actP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005145 actP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103154 actP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004871 actP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007541 actP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005794 actP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000660 actP CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266467 CDS
Person Approved Go view Shigella boydii 227 ADV-0004462 yjcG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010005 actP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074804 actP CDS
Person Approved Go view Shigella flexneri 301 ABT-0090341 yjcG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004401 yjcG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004616 actP CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000026 yjcG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002983 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000971 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002801 actP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002006 actP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001162 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235128 actP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008073 actP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004807 actP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008041 actP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003056 actP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116149 actP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006838 actP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007038 actP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001978 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005538 actP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007367 actP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030133 actP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004884 actP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004105 actP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004465 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008802 actP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007864 actP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000337 actP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000391 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004651 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000732 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000552 actP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21825mutantTn5 InsertionRequest the StrainABE-0013328actPyjcG::Tn5KAN-I-SceI at position 661 in Plus orientation ,+ pKD460Blattner Laboratory
FB22103mutantTn5 InsertionRequest the StrainABE-0013328actPyjcG::Tn5KAN-I-SceI at position 661 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4278253 to 4289902
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013319ghxPCDSforward42784794279828Downstream
ABE-0013323yjcECDSforward42799804281629Downstream
ABE-0013325yjcFCDScomplement42817834283075Downstream
ABE-0013328actPCDScomplement42832534284902Matches
ABE-0013330yjcHCDScomplement42848994285213Overlaps Upstream
ABE-0285673repeat_regionforward42853024285378Upstream
ABE-0013337acsCDScomplement42854134287371Upstream
ABE-0285850ytcBCDSforward42876114287667Upstream
ABE-0013342nrfACDSforward42877644289200Upstream
ABE-0013344nrfBCDSforward42892454289811Upstream
ABE-0013346nrfCCDSforward42898084290479Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.