Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013357 (gltP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013357 showshow history
Names
gltP JW4038 ECK4070 b4077
Product
glutamate/aspartate:proton symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4294481 4295794 1314 438
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001585
EnteroFam0013357: Trusted threshold=1162.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001991 (IPR001991 Sodium:dicarboxylate symporter) Apr 2008
Automated Process Approved IPR033380 (IPR033380 (DEPRECATED) Glutamate-aspartate symport protein GltP/GltT) Jul 2018
Automated Process Approved IPR036458 (IPR036458 Sodium:dicarboxylate symporter superfamily) Jul 2018
Automated Process Approved PF00375 (PF00375 Sodium:dicarboxylate symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015813 L-glutamate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR033380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0015810 aspartate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR033380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR033380, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015293 symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR033380, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4070 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4038 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4077 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamate/aspartate:proton symporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glutamate:aspartate symporter (DAACS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutamate-aspartate symport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013357: Trusted threshold=1162.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001585
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036458 Sodium:dicarboxylate symporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00375 Sodium:dicarboxylate symporter family Protein Sequence Similarity - PFAM Model Name: PF00375
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR033380 (DEPRECATED) Glutamate-aspartate symport protein GltP/GltT Protein Sequence Similarity - InterPro Domain: IPR033380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001991 Sodium:dicarboxylate symporter Protein Sequence Similarity - InterPro Domain: IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.23 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.1 (metabolism; building block biosynthesis; amino acids; glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.5 (metabolism; building block biosynthesis; amino acids; aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.135 (transport; substrate; Na+/glutamate/aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013357 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10405 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21345 Published Annotation - Swiss-Prot Accession Number: P21345 Jan 2005
Automated Process Approved db xref GI:1790514 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948591 Published Annotation - Entrez Gene Database ID: 948591
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21345 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutamate-aspartate symport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006537 - glutamate biosynthetic process; GO_process: GO:0006532 - aspartate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13460.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015810 aspartate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR033380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0015813 L-glutamate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR033380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR033380, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015293 symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR033380, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001585 gltP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001942 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001401 gltP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001597 gltP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002428 gltP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001791 gltP CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004229 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003872 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004136 gltP_3 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000180 gltP_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007614 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020737 gltP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002691 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000593 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297058 gltP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003498 gltP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003172 gltP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001952 gltP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006359 gltP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004361 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006892 gltP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004153 gltP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004734 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010108 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006287 gltP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009216 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081282 gltP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004744 gltP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005346 gltT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006168 gltP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006624 gltP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004697 gltP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009070 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003135 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008911 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007424 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007069 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006255 gltP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010413 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007085 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008229 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007199 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005781 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006528 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006005 gltP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005050 gltP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029251 gltP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007045 gltP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009010 gltP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004680 gltP CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003770 gltP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004164 gltP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004776 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004792 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004593 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004726 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178894 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004473 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004532 gltP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135171 gltP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003326 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004677 gltP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001042 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004530 gltP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002707 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005885 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003409 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002327 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003546 gltP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000437 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000315 gltP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004069 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008095 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003820 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288927 gltP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007308 gltP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061773 gltP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000868 gltP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001607 gltP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001793 gltP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006145 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000234 gltP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008705 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003553 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004899 gltP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008916 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013421 gltP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012685 gltP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007813 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008983 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007388 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004022 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005764 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008091 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008973 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008279 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004137 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004096 gltP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005304 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004325 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007462 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008600 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006289 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114505 gltP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085917 gltP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005157 gltP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103187 gltP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004861 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007530 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005804 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000657 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264477 CDS
Person Approved Go view Shigella boydii 227 ADV-0004472 gltP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010017 gltP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004642 gltP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074815 gltP CDS
Person Approved Go view Shigella flexneri 301 ABT-0090350 gltP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004391 gltP CDS
Person Approved Go view Shigella sonnei 046 ADD-0004625 gltP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002977 VCA0088 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002986 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000983 gltP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002804 gltP_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002009 gltP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001165 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235148 gltP pseudogene
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008070 gltP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004803 gltP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008037 gltP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003053 gltP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116172 gltP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006835 gltP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007035 gltP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001981 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005542 gltP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007371 gltP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030136 gltP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004881 gltP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004101 gltP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004461 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008805 gltP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007861 gltP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000340 gltP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000395 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004647 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000743 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000549 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21649mutantTn5 InsertionRequest the StrainABE-0013357gltPgltP::Tn5KAN-I-SceI at position 402 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4289481 to 4300794
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013344nrfBCDSforward42892454289811Upstream
ABE-0013346nrfCCDSforward42898084290479Upstream
ABE-0013348nrfDCDSforward42904764291432Upstream
ABE-0013350nrfECDSforward42915124293170Upstream
ABE-0013352nrfFCDSforward42931634293546Upstream
ABE-0013354nrfGCDSforward42935434294139Upstream
ABE-0013357gltPCDSforward42944814295794Matches
ABE-0285674repeat_regionforward42958354296434Downstream
ABE-0013360yjcOCDScomplement42964364297125Downstream
ABE-0013363fdhFCDScomplement42972194299366Downstream
ABE-0013366mdtPCDScomplement42995644301030Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.