Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013363 (fdhF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013363 showshow history
Names
fdhF JW4040 ECK4072 fdh chlF b4079
Product
formate dehydrogenase H
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4297219 4299366 2148 716
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006478 (IPR006478 Formate dehydrogenase, alpha subunit) Apr 2008
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR006963 (IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved PF04879 (PF04879 Molybdopterin oxidoreductase Fe4S4 domain) Jul 2018
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006963, IPR006656, IPR006657, IPR006478
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015942 formate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009326 formate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdhF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4072 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym fdh Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym chlF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW4040 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4079 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate dehydrogenase H Published Annotation - EcoCyc Accession Number: EG10285
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name selenopolypeptide subunit of formate dehydrogenase H Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name formate dehydrogenase H, selenopolypeptide subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name formate dehydrogenase-H, selenopolypeptide subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF04879 Molybdopterin oxidoreductase Fe4S4 domain Protein Sequence Similarity - PFAM Model Name: PF04879
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006478 Formate dehydrogenase, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.17.1.9 Published Annotation - Swiss-Prot Accession Number: P07658
Reference: Escherichia coli K-12 		Dec 2019
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.17.99.7 Published Annotation - Swiss-Prot Accession Number: P07658
Reference: Escherichia coli K-12 		Dec 2019
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948584 Published Annotation - Entrez Gene Database ID: 948584
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07658 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10285 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013363 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:3868721 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07658 Published Annotation - Swiss-Prot Accession Number: P07658 Jan 2005
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note selenopolypeptide subunit of formate dehydrogenase H; GO_process: GO:0006113 - fermentation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13462.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.44
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated transl except (pos:complement(4298947..4298949),aa:Sec) Experimental - PubMed ID: 3033637
Reference: Escherichia coli K-12 MC4100 		Aug 2021
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006963, IPR006656, IPR006657, IPR006478
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015942 formate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009326 formate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Approved Go view Dickeya dadantii 3937 ABF-0015753 fdhF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061496 fdhF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061761 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000114 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002276 fdhF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001798 fdhF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003988 fdhF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000178 fdhF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003713 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004254 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007636 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002709 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006890 fdhF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004160 fdhF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004727 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010105 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009214 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081290 fdhF CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004746 fdhF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004704 fdhF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009072 fdhF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003137 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029253 fdhF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009012 fdhF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003772 fdhF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004166 fdhF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004774 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004794 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004591 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004475 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004534 fdhF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135173 fdhF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003328 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005334 fdhF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005857 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007663 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002725 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001779 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006127 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005570 fdhF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013431 fdhF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012695 fdhF CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004098 fdhF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114510 fdhF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085919 fdhF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005161 fdhF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103190 fdhF CDS
Person Approved Go view Shigella boydii 227 ADV-0005111 fdhF CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0285211 fdhF pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0090352 fdhF pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0005322 fdhF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001141 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008090 fdhF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001326 fdhF_3 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235356 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004834 fdhF CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004701 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008143 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002967 fdhF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116465 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008375 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006943 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003513 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005636 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004030 fdhF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030227 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004786 fdhF CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004002 fdhF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004363 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006908 fdhF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007708 fdhF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000430 fdhF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000497 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004545 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000749 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000547 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4292219 to 4304366
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013350nrfECDSforward42915124293170Downstream
ABE-0013352nrfFCDSforward42931634293546Downstream
ABE-0013354nrfGCDSforward42935434294139Downstream
ABE-0013357gltPCDSforward42944814295794Downstream
ABE-0285674repeat_regionforward42958354296434Downstream
ABE-0013360yjcOCDScomplement42964364297125Downstream
ABE-0013363fdhFCDScomplement42972194299366Matches
ABE-0013366mdtPCDScomplement42995644301030Upstream
ABE-0013368mdtOCDScomplement43010274303078Upstream
ABE-0013373mdtNCDScomplement43030784304109Upstream
ABE-0285201ytcACDScomplement43041284304403Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.