Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013382 (alsE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013382 showshow history
Names
alsE JW4046 ECK4078 yjcU b4085
Product
allulose-6-phosphate 3-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4307783 4308478 696 232
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000056 (IPR000056 Ribulose-phosphate 3-epimerase-like) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved PF00834 (PF00834 Ribulose-phosphate 3 epimerase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004750 ribulose-phosphate 3-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alsE Experimental - PubMed ID: 10559180
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK4078 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4046 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjcU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b4085 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product allulose-6-phosphate 3-epimerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative hexose phosphate epimerase Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name D-allulose-6-phosphate 3-epimerase Experimental - PubMed ID: 10559180
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR000056 Ribulose-phosphate 3-epimerase-like Protein Sequence Similarity - InterPro Domain: IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00834 Ribulose-phosphate 3 epimerase family Protein Sequence Similarity - PFAM Model Name: PF00834
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.1.3.- Published Annotation - Swiss-Prot Accession Number: P32719 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11957 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32719 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013382 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948595 Published Annotation - Entrez Gene Database ID: 948595
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790523 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P32719 Published Annotation - Swiss-Prot Accession Number: P32719 Jan 2005
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC77046.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004750 ribulose-phosphate 3-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004833 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004510 alsE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004229 alsE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004310 alsE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004109 alsE CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001493 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003862 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006371 alsE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004378 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006882 alsE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004168 yjcU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004718 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010095 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006299 alsE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009205 AlsE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081298 alsE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004755 alsE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006635 alsE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004711 alsE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007064 alsE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004692 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003778 alsE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004173 alsE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004801 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004584 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004741 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178911 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004483 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004543 alsE CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004690 yjcU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003040 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0006441 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003167 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001820 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001168 rpe_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21829mutantTn5 InsertionRequest the StrainABE-0013382alsEyjcU::Tn5KAN-I-SceI at position 218 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4302783 to 4313478
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013368mdtOCDScomplement43010274303078Downstream
ABE-0013373mdtNCDScomplement43030784304109Downstream
ABE-0285201ytcACDScomplement43041284304403Downstream
ABE-0013377yjcSCDScomplement43046124306597Downstream
ABE-0013380alsKCDScomplement43068704307799Overlaps Downstream
ABE-0013382alsECDScomplement43077834308478Matches
ABE-0013392alsCCDScomplement43084894309469Upstream
ABE-0013394alsACDScomplement43094484310980Upstream
ABE-0285675repeat_regionforward43110144311095Upstream
ABE-0013398alsBCDScomplement43111074312042Upstream
ABE-0013400alsRCDScomplement43121014312991Upstream
ABE-0013405rpiBCDSforward43133504313799Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.