Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013394 (alsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013394 showshow history
Names
alsA JW4048 ECK4080 yjcW b4087
Product
ATP-binding component of an ABC superfamily D-allose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4309448 4310980 1533 511
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alsA Experimental - PubMed ID: 9401019
Reference: Escherichia coli
Aug 2002
Person Approved synonym yjcW Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW4048 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4080 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4087 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily D-allose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Uncurated alternate product name allose transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name D-allose transport ATP-binding protein Experimental - PubMed ID: 9401019
Reference: Escherichia coli
Jan 2006
Protein Family
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 3.6.3.17 Published Annotation - Swiss-Prot Accession Number: P32721 Feb 2006
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.10 (transport; substrate; allose/ribose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11959 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1790525 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948593 Published Annotation - Entrez Gene Database ID: 948593
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P32721 Published Annotation - Swiss-Prot Accession Number: P32721 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32721 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0013394 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC77048.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004189 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004242 alsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004820 alsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009312 alsA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004398 alsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001495 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003860 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006373 alsA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004381 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006880 alsA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004170 alsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004715 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010093 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009203 AlsA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081300 alsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004757 alsA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004713 alsA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007066 rbsA_3 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004694 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003780 alsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004175 alsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004803 alsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004582 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004743 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178914 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004485 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004545 alsA CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004691 alsA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001170 mglA_1 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242748 mglA8 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004261 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000382 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006686 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002394 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118423 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006744 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004883 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002069 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006609 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008026 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033114 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007843 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003798 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000657 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006282 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004757 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003338 mglA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004017 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000954 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4304448 to 4315980
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013377yjcSCDScomplement43046124306597Downstream
ABE-0013380alsKCDScomplement43068704307799Downstream
ABE-0013382alsECDScomplement43077834308478Downstream
ABE-0013392alsCCDScomplement43084894309469Overlaps Downstream
ABE-0013394alsACDScomplement43094484310980Matches
ABE-0285675repeat_regionforward43110144311095Upstream
ABE-0013398alsBCDScomplement43111074312042Upstream
ABE-0013400alsRCDScomplement43121014312991Upstream
ABE-0013405rpiBCDSforward43133504313799Upstream
ABE-0174120yjdPCDSforward43138684314197Upstream
ABE-0013412phnPCDScomplement43143444315102Upstream
ABE-0013415phnOCDScomplement43151044315538Upstream
ABE-0013417phnNCDScomplement43155254316082Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.