Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013415 (phnO) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013415 showshow history
Names
phnO JW4054 ECK4086 b4093
Product
aminoalkylphosphonate N-acetyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4315104 4315538 435 145
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000182 (IPR000182 GNAT domain) Apr 2008
Automated Process Approved IPR016181 (IPR016181 Acyl-CoA N-acyltransferase) Jul 2018
Automated Process Approved PF00583 (PF00583 Acetyltransferase (GNAT) family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008080 N-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phnO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4086 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4054 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4093 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product aminoalkylphosphonate N-acetyltransferase Published Annotation - EcoCyc Accession Number: EG10724
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name conserved protein in phn operon, acyltransferase domain Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative regulator, phn operon Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted acyltransferase with acyl-CoA N-acyltransferase domain Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR000182 GNAT domain Protein Sequence Similarity - InterPro Domain: IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00583 Acetyltransferase (GNAT) family Protein Sequence Similarity - PFAM Model Name: PF00583
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016181 Acyl-CoA N-acyltransferase Protein Sequence Similarity - InterPro Domain: IPR016181
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.3.-.- Protein Sequence Similarity - InterPro Domain: IPR000182
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10724 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790531 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948599 Published Annotation - Entrez Gene Database ID: 948599
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P16691 Published Annotation - Swiss-Prot Accession Number: P16691 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16691 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013415 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative regulator, phn operon Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77054.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008080 N-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005968 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003343 phnO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003714 phnO CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003799 phnO CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003036 phnO CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000381 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003854 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004130 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000161 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000612 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006379 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004387 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006874 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004176 phnO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004709 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010085 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006308 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009832 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081306 phnO CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004763 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005360 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006182 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006644 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004719 phnO CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009084 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003153 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029270 phnO pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007072 phnO CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009022 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003785 phnO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004181 phnO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004765 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004810 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004575 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004749 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178920 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004492 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004551 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135188 phnO pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003345 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004697 phnO CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002722 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008710 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003542 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004906 phnO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008921 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013438 phnO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012706 phnO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007808 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008987 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007393 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004027 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005769 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008096 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008978 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008284 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004140 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004100 phnO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005311 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004330 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007457 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008604 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006294 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114518 phnO CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085921 phnO CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005163 phnO CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103196 phnO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004856 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007525 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005809 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265462 CDS
Person Approved Go view Shigella boydii 227 ADV-0004483 phnO CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004663 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004643 phnO CDS
Person Approved Go view Shigella sonnei 046 ADD-0004636 phnO CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4310104 to 4320538
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013394alsACDScomplement43094484310980Downstream
ABE-0285675repeat_regionforward43110144311095Downstream
ABE-0013398alsBCDScomplement43111074312042Downstream
ABE-0013400alsRCDScomplement43121014312991Downstream
ABE-0013405rpiBCDSforward43133504313799Downstream
ABE-0174120yjdPCDSforward43138684314197Downstream
ABE-0013412phnPCDScomplement43143444315102Downstream
ABE-0013415phnOCDScomplement43151044315538Matches
ABE-0013417phnNCDScomplement43155254316082Overlaps Upstream
ABE-0013419phnMCDScomplement43160824317218Upstream
ABE-0013421phnLCDScomplement43172154317895Upstream
ABE-0285676repeat_regionforward43179174317999Upstream
ABE-0013424phnKCDScomplement43180064318764Upstream
ABE-0013426phnJCDScomplement43187614319606Upstream
ABE-0013428phnICDScomplement43195994320663Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.