Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013417 (phnN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013417 showshow history
Names
phnN JW4055 ECK4087 b4094
Product
ribose 1,5-bisphosphokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4315525 4316082 558 186
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012699 (IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN) Apr 2008
Automated Process Approved IPR008145 (IPR008145 Guanylate kinase/L-type calcium channel beta subunit) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF13238 (PF13238 AAA domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012699
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0033863 ribose 1,5-bisphosphate phosphokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012699
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phnN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4055 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4087 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4094 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ribose 1,5-bisphosphokinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative C-P (carbon-phosphorous) lyase component Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-binding component of phosphonate transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN Protein Sequence Similarity - InterPro Domain: IPR012699
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008145 Guanylate kinase/L-type calcium channel beta subunit Protein Sequence Similarity - InterPro Domain: IPR008145
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13238 AAA domain Protein Sequence Similarity - PFAM Model Name: PF13238
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.4.2.4 Protein Sequence Similarity - InterPro Domain: IPR012699
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Uncurated EC number 2.7.4.23 Published Annotation - Database Name: EC2GO: GO:0033863
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013417 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948608 Published Annotation - Entrez Gene Database ID: 948608
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P16690 Published Annotation - Swiss-Prot Accession Number: P16690 Jan 2005
Automated Process Approved db xref EcoGene:EG10723 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790532 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16690 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of phosphonate transport; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77055.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012699
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0033863 ribose 1,5-bisphosphate phosphokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012699
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002711 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002640 phnN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002652 phnN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001992 phnN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002894 phnN CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003853 phnN CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004129 phnN CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000160 phnN CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007596 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020699 phnN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002674 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000613 phnN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006380 phnN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004388 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006873 phnN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004177 phnN CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0004708 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010084 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006309 phnN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009831 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081810 phnN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004764 phnN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005361 phnN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006183 phnN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006645 phnN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004720 phnN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009085 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003154 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008934 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007447 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007093 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006231 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010437 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007109 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008253 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007224 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005804 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006551 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005980 phnN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005073 phnN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029271 phnN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007073 phnN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009023 phnN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004700 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003786 phnN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004182 phnN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004764 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004811 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004574 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004750 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178921 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0004493 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004552 phnN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135189 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003346 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004698 phnN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004060 phnN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004542 phnN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002723 phnN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005913 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001739 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001851 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001722 phnN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002310 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002460 phnN CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001686 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010202 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001451 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287244 phnN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005605 phnN CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060713 phnN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002929 phnN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005028 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002611 phnN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003541 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000500 phnN CDS
Person Approved Go view Shigella boydii 227 ADV-0004484 phnN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004664 phnN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004642 phnN CDS
Person Approved Go view Shigella sonnei 046 ADD-0004637 phnN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001027 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001472 phnN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002165 phnN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001606 phnN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001877 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235601 phnN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008150 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003550 phnN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008402 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003896 phnN CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127000 phnN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006330 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005817 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005806 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004158 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030354 phnN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006560 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000771 phnN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003917 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004983 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007586 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000547 phnN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000638 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004390 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000761 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000542 phnN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21652mutantTn5 InsertionRequest the StrainABE-0013417phnNphnN::Tn5KAN-I-SceI at position 113 in Minus orientation ,+ pKD460Blattner Laboratory
FB21653mutantTn5 InsertionRequest the StrainABE-0013417phnNphnN::Tn5KAN-I-SceI at position 113 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4310525 to 4321082
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013394alsACDScomplement43094484310980Downstream
ABE-0285675repeat_regionforward43110144311095Downstream
ABE-0013398alsBCDScomplement43111074312042Downstream
ABE-0013400alsRCDScomplement43121014312991Downstream
ABE-0013405rpiBCDSforward43133504313799Downstream
ABE-0174120yjdPCDSforward43138684314197Downstream
ABE-0013412phnPCDScomplement43143444315102Downstream
ABE-0013415phnOCDScomplement43151044315538Overlaps Downstream
ABE-0013417phnNCDScomplement43155254316082Matches
ABE-0013419phnMCDScomplement43160824317218Overlaps Upstream
ABE-0013421phnLCDScomplement43172154317895Upstream
ABE-0285676repeat_regionforward43179174317999Upstream
ABE-0013424phnKCDScomplement43180064318764Upstream
ABE-0013426phnJCDScomplement43187614319606Upstream
ABE-0013428phnICDScomplement43195994320663Upstream
ABE-0013430phnHCDScomplement43206634321247Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.