Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013428 (phnI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013428 showshow history
Names
phnI JW4060 ECK4092 b4099
Product
carbon-phosphorus lyase complex subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4319599 4320663 1065 355
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008773 (IPR008773 Phosphonate metabolism protein PhnI) Apr 2008
Automated Process Approved PF05861 (PF05861 Bacterial phosphonate metabolism protein (PhnI)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0019634 organic phosphonate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008773
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015716 organic phosphonate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008773
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phnI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4092 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4060 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4099 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product carbon-phosphorus lyase complex subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative C-P (carbon-phosphorous) lyase component Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphonate metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name ribophosphonate triphosphate synthase complex, probable catalytic subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR008773 Phosphonate metabolism protein PhnI Protein Sequence Similarity - InterPro Domain: IPR008773
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF05861 Bacterial phosphonate metabolism protein (PhnI) Protein Sequence Similarity - PFAM Model Name: PF05861
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10718 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013428 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790537 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948605 Published Annotation - Entrez Gene Database ID: 948605
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16687 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P16687 Published Annotation - Swiss-Prot Accession Number: P16687 Jan 2005
Automated Process Approved function enzyme; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note phosphonate metabolism; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77060.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0019634 organic phosphonate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008773
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015716 organic phosphonate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008773
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002714 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002595 phnI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002593 phnI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002236 phnI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002841 phnI CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000387 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003848 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004124 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000155 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007601 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020693 phnI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002679 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000618 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006385 phnI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004393 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006868 phnI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004182 phnI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004702 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010079 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006314 phnI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009826 PhnI CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081311 phnI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004770 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005366 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006188 phnI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006650 phnI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004725 phnI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009090 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003159 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008939 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007452 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007098 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006226 phnI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010442 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007114 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008258 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007229 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005809 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006556 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005975 phnI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005078 phnI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029276 phnI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007078 phnI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009028 phnI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004708 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003791 phnI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004187 phnI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004759 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004816 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004569 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004755 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178928 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004498 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004557 phnI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135194 phnI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003351 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004703 phnI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004065 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001306 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004547 phnI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002728 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005908 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001744 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001856 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002305 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002465 phnI CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001681 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010207 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001446 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287250 phnI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005610 phnI CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060708 phnI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002924 phnI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005512 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002606 phnI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003536 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000495 CDS
Person Approved Go view Shigella boydii 227 ADV-0004489 phnI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004669 phnI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004637 phnI CDS
Person Approved Go view Shigella sonnei 046 ADD-0004642 phnI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003283 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001485 phnI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002170 phnI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001601 phnI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001882 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235607 phnI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008155 phnI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003545 phnI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003901 phnI CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126989 phnI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006335 phnI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005822 phnI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002363 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005811 phnI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004163 phnI CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030360 phnI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006565 phnI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000776 phnI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003912 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004988 phnI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007581 phnI CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000552 phnI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000643 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004385 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000791 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000537 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4314599 to 4325663
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013412phnPCDScomplement43143444315102Downstream
ABE-0013415phnOCDScomplement43151044315538Downstream
ABE-0013417phnNCDScomplement43155254316082Downstream
ABE-0013419phnMCDScomplement43160824317218Downstream
ABE-0013421phnLCDScomplement43172154317895Downstream
ABE-0285676repeat_regionforward43179174317999Downstream
ABE-0013424phnKCDScomplement43180064318764Downstream
ABE-0013426phnJCDScomplement43187614319606Overlaps Downstream
ABE-0013428phnICDScomplement43195994320663Matches
ABE-0013430phnHCDScomplement43206634321247Overlaps Upstream
ABE-0013433phnGCDScomplement43212444321696Upstream
ABE-0013435phnFCDScomplement43216974322422Upstream
ABE-0013437phnE_2CDSpcomplement43224434322811Upstream
ABE-0285115phnEpseudogenecomplement43224434323230Upstream
ABE-0013439phnE_1CDSpcomplement43226614323230Upstream
ABE-0285677repeat_regionforward43232464323332Upstream
ABE-0013442phnDCDScomplement43233364324352Upstream
ABE-0013444phnCCDScomplement43243774325165Upstream
ABE-0013447yjdNCDScomplement43252984325741Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.