Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013430 (phnH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013430 showshow history
Names
phnH JW4061 ECK4093 b4100
Product
carbon-phosphorus lyase complex subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4320663 4321247 585 195
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008772 (IPR008772 Bacterial phosphonate metabolism, PhnH) Apr 2008
Automated Process Approved IPR038058 (IPR038058 PhnH-like superfamily) Jul 2018
Automated Process Approved PF05845 (PF05845 Bacterial phosphonate metabolism protein (PhnH)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0019634 organic phosphonate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015716 organic phosphonate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008772
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phnH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4093 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4061 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4100 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product carbon-phosphorus lyase complex subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative C-P (carbon-phosphorous) lyase component Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphonate metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name ribophosphonate triphosphate synthase subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR008772 Bacterial phosphonate metabolism, PhnH Protein Sequence Similarity - InterPro Domain: IPR008772
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF05845 Bacterial phosphonate metabolism protein (PhnH) Protein Sequence Similarity - PFAM Model Name: PF05845
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR038058 PhnH-like superfamily Protein Sequence Similarity - InterPro Domain: IPR038058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10717 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790538 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948619 Published Annotation - Entrez Gene Database ID: 948619
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P16686 Published Annotation - Swiss-Prot Accession Number: P16686 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16686 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013430 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note phosphonate metabolism; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77061.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015716 organic phosphonate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008772
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019634 organic phosphonate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002715 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002542 phnH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002500 phnH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002235 phnH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002758 phnH CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000388 phnH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003847 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004123 phnH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000154 phnH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007602 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020692 phnH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002680 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000619 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006386 phnH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004394 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006867 phnH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004183 phnH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004701 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010078 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006315 phnH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009825 PhnH CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081312 phnH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004771 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005367 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006189 phnH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006651 phnH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004726 phnH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009091 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003160 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008940 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007453 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007099 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006225 phnH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010443 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007115 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008259 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007230 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005810 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006557 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005974 phnH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005079 phnH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029277 phnH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007079 phnH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009029 phnH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003792 phnH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004188 phnH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004758 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004817 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004568 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004756 phnH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004499 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004558 phnH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135195 phnH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003352 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004704 phnH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004066 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004548 phnH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002729 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005907 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060707 phnH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002923 phnH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005511 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002605 phnH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003535 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000494 CDS
Person Approved Go view Shigella boydii 227 ADV-0004490 phnH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004670 phnH CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004636 phnH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004643 phnH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003282 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001486 phnH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002171 phnH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001600 phnH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001883 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235610 phnH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008156 phnH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003544 phnH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008408 phnH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003902 phnH CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126988 phnH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006336 phnH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005823 phnH CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005812 phnH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004164 phnH CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030361 phnH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006566 phnH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000778 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003911 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004989 phnH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007580 phnH CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000553 phnH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000644 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004384 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000793 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000536 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0013430 phnH lambda repressor assay Doodle - bnumber: b4100 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21660mutantTn5 InsertionRequest the StrainABE-0013430phnHphnH::Tn5KAN-I-SceI at position 393 in Plus orientation ,- pKD465Blattner Laboratory
FB21661mutantTn5 InsertionRequest the StrainABE-0013430phnHphnH::Tn5KAN-I-SceI at position 393 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4315663 to 4326247
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013417phnNCDScomplement43155254316082Downstream
ABE-0013419phnMCDScomplement43160824317218Downstream
ABE-0013421phnLCDScomplement43172154317895Downstream
ABE-0285676repeat_regionforward43179174317999Downstream
ABE-0013424phnKCDScomplement43180064318764Downstream
ABE-0013426phnJCDScomplement43187614319606Downstream
ABE-0013428phnICDScomplement43195994320663Overlaps Downstream
ABE-0013430phnHCDScomplement43206634321247Matches
ABE-0013433phnGCDScomplement43212444321696Overlaps Upstream
ABE-0013435phnFCDScomplement43216974322422Upstream
ABE-0013437phnE_2CDSpcomplement43224434322811Upstream
ABE-0285115phnEpseudogenecomplement43224434323230Upstream
ABE-0013439phnE_1CDSpcomplement43226614323230Upstream
ABE-0285677repeat_regionforward43232464323332Upstream
ABE-0013442phnDCDScomplement43233364324352Upstream
ABE-0013444phnCCDScomplement43243774325165Upstream
ABE-0013447yjdNCDScomplement43252984325741Upstream
ABE-0285678repeat_regionforward43258024326384Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.