Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013462 (proP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013462 showshow history
Names
proP JW4072 ECK4104 b4111
Product
proline/glycine betaine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4330502 4332004 1503 501
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004736 (IPR004736 MFS transporter, metabolite:H symporter) Apr 2008
Automated Process Approved IPR002701 (IPR002701 Chorismate mutase II, prokaryotic-type) Apr 2008
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Apr 2008
Automated Process Approved IPR005828 (IPR005828 Major facilitator, sugar transporter-like) Apr 2008
Automated Process Approved IPR015041 (IPR015041 Osmosensory transporter coiled coil) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved IPR036292 (IPR036292 Proline/betaine transporter ProP, C-terminal) Jul 2018
Automated Process Approved PF00083 (PF00083 Sugar (and other) transporter) Jul 2018
Automated Process Approved PF08946 (PF08946 Osmosensory transporter coiled coil) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4072 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4104 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4111 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product proline/glycine betaine transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name low-affinity transport system; proline permease II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name proline transport protein, low-affinity (proline permease II) (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR005828 Major facilitator, sugar transporter-like Protein Sequence Similarity - InterPro Domain: IPR005828
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036292 Proline/betaine transporter ProP, C-terminal Protein Sequence Similarity - InterPro Domain: IPR036292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00083 Sugar (and other) transporter Protein Sequence Similarity - PFAM Model Name: PF00083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08946 Osmosensory transporter coiled coil Protein Sequence Similarity - PFAM Model Name: PF08946
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015041 Osmosensory transporter coiled coil Protein Sequence Similarity - InterPro Domain: IPR015041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002701 Chorismate mutase II, prokaryotic-type Protein Sequence Similarity - InterPro Domain: IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004736 MFS transporter, metabolite:H symporter Protein Sequence Similarity - InterPro Domain: IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 5.4.99.5 Protein Sequence Similarity - InterPro Domain: IPR002701
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 5.5.1 (cell processes; adaptation to stress; osmotic pressure) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.159 (transport; substrate; proline/betaine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790550 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0C0L7 Published Annotation - Swiss-Prot Accession Number: P0C0L7 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0C0L7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948626 Published Annotation - Entrez Gene Database ID: 948626
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0013462 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11612 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note low-affinity transport system; proline permease II; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006561 - proline biosynthetic process; GO_process: GO:0006970 - response to osmotic stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77072.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002474 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002323 proP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002156 proP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000738 proP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001963 proP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003752 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000011 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003785 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003648 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004978 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000143 proP_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007711 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015838 ousA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001361 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000630 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306646 proP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003749 proP1 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003408 proP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002021 proP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006397 proP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004405 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006857 proP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004193 proP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004691 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010066 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006327 proP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005756 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081322 proP CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004781 proP pseudogene
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006199 proP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006661 proP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004736 proP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009102 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003172 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008950 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007464 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007109 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006215 proP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010454 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007125 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008269 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007241 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005820 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006567 proP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005964 proP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005089 proP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029287 proP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008518 proP_3 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009039 proP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004721 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003803 proP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004200 proP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004746 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004828 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004557 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004766 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178939 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004509 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004568 proP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135205 proP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003364 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004714 proP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002258 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003104 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004553 proP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002740 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002910 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000413 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003035 proP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000954 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003856 proP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000298 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011470 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000546 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288434 proP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006794 proP CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061799 proP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000890 proP CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000404 proP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006177 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003862 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008713 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003527 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004909 proP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013445 proP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012713 proP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007805 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008990 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007396 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004030 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005772 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008099 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008981 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008287 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004143 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004103 proP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005314 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004333 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007454 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008607 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006297 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114522 proP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085924 proP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005167 proP CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103209 proP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004853 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007522 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005812 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003981 CDS
Person Approved Go view Shigella boydii 227 ADV-0004503 proP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004681 proP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004620 proP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074834 proP CDS
Person Approved Go view Shigella flexneri 301 ABT-0090327 proP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004375 proP CDS
Person Approved Go view Shigella sonnei 046 ADD-0004653 proP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001685 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010312 proP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002069 proP_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002770 proP_3 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002966 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033491 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000842 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000526 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21674mutantTn5 InsertionRequest the StrainABE-0013462proPproP::Tn5KAN-I-SceI at position 669 in Minus orientation ,+ pKD460Blattner Laboratory
FB21675mutantTn5 InsertionRequest the StrainABE-0013462proPproP::Tn5KAN-I-SceI at position 669 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4325502 to 4337004
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013447yjdNCDScomplement43252984325741Upstream
ABE-0285678repeat_regionforward43258024326384Upstream
ABE-0013451yjdMCDScomplement43263994326734Upstream
ABE-0013456rdcACDSforward43271354329363Upstream
ABE-0013459rdcBCDSforward43293604330238Upstream
ABE-0013462proPCDSforward43305024332004Matches
ABE-0285679repeat_regionforward43320144332045Downstream
ABE-0285319pmrRCDSforward43321164332205Downstream
ABE-0013464basSCDScomplement43321814333272Downstream
ABE-0013466basRCDScomplement43332824333950Downstream
ABE-0013469eptACDScomplement43339474335590Downstream
ABE-0013473adiCCDScomplement43356944337031Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.