Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013546 (dcuA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013546 showshow history
Names
dcuA JW5735 ECK4132 genA b4138
Product
C4-dicarboxylate antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4365472 4366773 1302 434
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001591
EnteroFam0013546: Trusted threshold=1064.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004668 (IPR004668 Anaerobic c4-dicarboxylate membrane transporter) Apr 2008
Automated Process Approved PF03605 (PF03605 Anaerobic c4-dicarboxylate membrane transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dcuA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym genA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW5735 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4132 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4138 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product C4-dicarboxylate antiporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name anaerobic dicarboxylate transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013546: Trusted threshold=1064.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001591
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004668 Anaerobic c4-dicarboxylate membrane transporter Protein Sequence Similarity - InterPro Domain: IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03605 Anaerobic c4-dicarboxylate membrane transporter Protein Sequence Similarity - PFAM Model Name: PF03605
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.13 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The C4-Dicarboxylate Uptake (Dcu) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.46 (transport; substrate; dicarboxylate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948659 Published Annotation - Entrez Gene Database ID: 948659
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABN5 Published Annotation - Swiss-Prot Accession Number: P0ABN5 Jan 2006
Automated Process Approved db xref GI:1790580 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABN5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013546 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11225 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note anaerobic dicarboxylate transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77098.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001591 dcuA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001933 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001430 dcuA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001495 dcuA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002061 dcuA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000341 dcuA CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003809 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004056 dcuA_3 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000980 dcuA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008622 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018664 dcuA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000555 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297291 dcuA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003400 dcuA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003091 dcuA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001119 dcuA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006426 dcuA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004434 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006823 dcuA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004282 dcuA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004594 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010018 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008624 dcuA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005724 dcuA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081431 dcuA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004811 dcuA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005480 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006228 dcuA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009649 dcuA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004762 dcuA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009130 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003200 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008980 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007494 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007139 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006185 dcuA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010484 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007154 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008298 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007272 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005849 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006598 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010061 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005119 dcuA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029315 dcuA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008548 dcuA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009067 dcuA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003826 dcuA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004228 dcuA pseudogene
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004864 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004862 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004675 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004798 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178967 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004538 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004599 dcuA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135232 dcuA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003393 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004744 dcuA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003956 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001170 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004578 dcuA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008415 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003465 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002269 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003639 dcuA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004524 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000419 dcuA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003866 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008200 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003907 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289049 dcuA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007365 dcuA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060845 dcuA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002737 dcuA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001342 dcuA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000939 dcuA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005051 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146249 dcuA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008763 dcuA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003467 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004961 dcuA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008960 dcuA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013551 dcuA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012814 dcuA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007768 dcuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009097 dcuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008471 dcuA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004069 dcuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005821 dcuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008148 dcuA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009031 dcuA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008328 dcuA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004176 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004136 dcuA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004383 dcuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008657 dcuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006346 dcuA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114798 dcuA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086102 dcuA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005207 dcuA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103317 dcuA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004813 dcuA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008706 dcuA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008835 dcuA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000619 CDS
Person Approved Go view Shigella boydii 227 ADV-0004701 dcuA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010086 dcuA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007605 dcuA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005022 dcuA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075895 dcuA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090502 dcuA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004565 dcuA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004694 dcuA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002171 dcuA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002798 VC2699 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006431 dcuA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001975 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001097 b4138 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002860 b4138 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003030 dcuA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003036 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235367 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004831 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004697 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008140 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002964 dcuA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116482 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008372 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006940 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003516 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005639 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004033 dcuA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030231 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004783 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003998 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004359 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006905 dcuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007705 dcuA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000433 dcuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000501 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004541 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000889 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000501 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21698mutantTn5 InsertionRequest the StrainABE-0013546dcuAdcuA::Tn5KAN-I-SceI at position 732 in Minus orientation ,+ pKD460Blattner Laboratory
FB21699mutantTn5 InsertionRequest the StrainABE-0013546dcuAdcuA::Tn5KAN-I-SceI at position 732 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4360472 to 4371773
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013532cadCCDScomplement43603964361934Downstream
ABE-0285247yjdQpseudogenecomplement43621944362361Downstream
ABE-0013535pheUtRNAcomplement43625514362626Downstream
ABE-0013537yjdCCDScomplement43627334363308Downstream
ABE-0013539dsbDCDScomplement43633454365042Downstream
ABE-0013544cutACDScomplement43650184365356Downstream
ABE-0013546dcuACDScomplement43654724366773Matches
ABE-0285838aspXncRNAcomplement43668394366951Upstream
ABE-0013551aspACDScomplement43668914368327Upstream
ABE-0013557fxsACDSforward43686644369140Upstream
ABE-0013559yjeHCDScomplement43691564370412Upstream
ABE-0013566groSCDSforward43706884370981Upstream
ABE-0013568groLCDSforward43710254372671Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.