Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013580 (epmB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013580 showshow history
Names
epmB yjeK JW4106 ECK4140 b4146
Product
lysine 2,3-aminomutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4374629 4375657 1029 343
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001597
EnteroFam0013580: Trusted threshold=909.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003739 (IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase) Apr 2008
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Apr 2008
Automated Process Approved IPR022462 (IPR022462 Lysine-2,3-aminomutase-like) Jul 2018
Automated Process Approved PF13353 (PF13353 4Fe-4S single cluster domain) Jul 2018
Automated Process Approved PF04055 (PF04055 Radical SAM superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name epmB Published Annotation - PubMed ID: 22706199
Reference: Escherichia coli K-12 		Jan 2019
Person Approved synonym JW4106 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjeK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4140 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4146 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lysine 2,3-aminomutase Experimental - PubMed ID: 17042480
Reference: Escherichia coli JM109 		Feb 2007
Automated Process Approved alternate product name EF-P-Lys34 lysylation protein; weak lysine 2,3-aminomutase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0013580: Trusted threshold=909.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001597
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Protein Sequence Similarity - InterPro Domain: IPR003739
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR022462 Lysine-2,3-aminomutase-like Protein Sequence Similarity - InterPro Domain: IPR022462
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13353 4Fe-4S single cluster domain Protein Sequence Similarity - PFAM Model Name: PF13353
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04055 Radical SAM superfamily Protein Sequence Similarity - PFAM Model Name: PF04055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.4.3.- Experimental - PubMed ID: 17042480
Reference: Escherichia coli JM109 		Feb 2007
Automated Process Approved EC number 5.4.3.2 Experimental - PubMed ID: 17042480
Reference: Escherichia coli JM109 		Sep 2007
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment YjeK from Escherichia coli has low lysine 2,3-aminomutase activity relative to the homolog from Clostridium subterminale, kamA. These two homologs function by analagous but stereochemically variant mechanisms. The reaction product of YjeK is (R)-beta-lysine and kamA produces the stereoisomer (S)-beta-lysine. Experimental - PubMed ID: 17042480
Reference: Escherichia coli K-12 JM109 		Apr 2008
Automated Process Approved db xref EcoGene:EG12473 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790589 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948662 Published Annotation - Entrez Gene Database ID: 948662
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39280 Published Annotation - Swiss-Prot Accession Number: P39280 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39280 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013580 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Protein modification Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77106.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001597 epmB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001608 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001034 yjeK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000637 epmB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000268 yjeK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000515 epmB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000454 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003561 CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104748 yjeK CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104126 yjeK CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000450 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003802 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004048 kamA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000988 kamA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004817 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017831 epmB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003783 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000785 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297311 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003394 yjeK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003085 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001127 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006434 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004442 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006815 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004290 yjeK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004586 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010008 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008632 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005714 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081442 yjeK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004821 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005491 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006238 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009657 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004770 yjeK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009140 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003210 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008987 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007501 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007147 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006178 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010492 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007161 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008305 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007280 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005857 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006607 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010054 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005127 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029323 yjeK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008556 epmB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009076 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004768 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004236 yjeK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004872 epmB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004870 epmB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004683 epmB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004809 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178975 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004547 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004607 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135240 yjeK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003403 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004753 yjeK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003962 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001198 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004594 yjeK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002767 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004888 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003472 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002261 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003645 yjeK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004517 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000425 yjeK CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003860 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008206 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003913 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289056 yjeK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007371 yjeK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064296 yjeK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003901 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004225 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003855 yjeK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009005 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146228 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008771 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003456 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004970 yjeK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008969 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013578 yjeK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012836 yjeK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007760 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009105 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008463 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004078 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005829 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008157 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009039 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008336 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004185 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004145 yjeK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005489 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004391 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008620 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008665 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006355 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114814 yjeK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086111 yjeK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005219 yjeK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103339 yjeK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004805 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008698 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008827 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000613 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004693 yjeK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010095 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007613 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004961 yjeK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075908 yjeK CDS
Person Approved Go view Shigella flexneri 301 ABT-0090512 yjeK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004576 yjeK CDS
Person Approved Go view Shigella sonnei 046 ADD-0004704 yjeK CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002163 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002760 VC2661 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000453 yjeK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006448 yjeK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001981 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001116 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002866 kamA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003036 yjeK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003043 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235387 yjeK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004825 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004690 yjeK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008134 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002958 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116509 yjeK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008366 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006931 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005645 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004039 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030237 yjeK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004777 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003991 yjeK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004352 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006899 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007699 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000439 yjeK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000508 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004533 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000913 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000493 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21833mutantTn5 InsertionRequest the StrainABE-0013580epmByjeK::Tn5KAN-I-SceI at position 488 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4369629 to 4380657
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013559yjeHCDScomplement43691564370412Downstream
ABE-0013566groSCDSforward43706884370981Downstream
ABE-0013568groLCDSforward43710254372671Downstream
ABE-0013572yjeICDSforward43728094373162Downstream
ABE-0285681repeat_regionforward43731974373295Downstream
ABE-0013575yjeJCDScomplement43733654374234Downstream
ABE-0285682repeat_regionforward43744984374596Downstream
ABE-0013580epmBCDScomplement43746294375657Matches
ABE-0013583efpCDSforward43756994376265Upstream
ABE-0047210ecnACDSforward43763174376442Upstream
ABE-0047211ecnBCDSforward43765534376699Upstream
ABE-0013588gdxCDSforward43768754377192Upstream
ABE-0013590blcCDScomplement43771894377722Upstream
ABE-0013592ampCCDScomplement43778114378944Upstream
ABE-0013595frdDCDScomplement43790074379366Upstream
ABE-0013598frdCCDScomplement43793774379772Upstream
ABE-0013602frdBCDScomplement43797834380517Upstream
ABE-0013604frdACDScomplement43805104382318Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.