Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013598 (frdC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013598 showshow history
Names
frdC JW4113 ECK4148 b4152
Product
fumarate reductase membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4379377 4379772 396 132
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001600
EnteroFam0013598: Trusted threshold=330.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003510 (IPR003510 Fumarate reductase, subunit C) Apr 2008
Automated Process Approved IPR034804 (IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit) Jul 2018
Automated Process Approved PF02300 (PF02300 Fumarate reductase subunit C) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003510
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003510
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name frdC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW4113 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4148 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4152 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product fumarate reductase membrane protein Published Annotation - EcoCyc Accession Number: EG10332
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name fumarate reductase, anaerobic, membrane anchor polypeptide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name fumarate reductase (anaerobic), membrane anchor subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013598: Trusted threshold=330.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001600
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02300 Fumarate reductase subunit C Protein Sequence Similarity - PFAM Model Name: PF02300
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003510 Fumarate reductase, subunit C Protein Sequence Similarity - InterPro Domain: IPR003510
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Protein Sequence Similarity - InterPro Domain: IPR034804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10332 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A8Q0 Published Annotation - Swiss-Prot Accession Number: P0A8Q0 Jan 2006
Automated Process Approved db xref GeneID:948680 Published Annotation - Entrez Gene Database ID: 948680
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790595 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013598 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8Q0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note fumarate reductase, anaerobic, membrane anchor polypeptide; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006113 - fermentation; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77112.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003510
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003510
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001600 frdC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001611 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001833 frdC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001919 frdC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000694 frdC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001917 frdC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000449 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003566 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000459 frdC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003792 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004040 frdC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000998 frdC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004823 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017839 frdC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003778 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000795 CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0000425 frdC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001109 frdC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006442 frdC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004450 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006807 frdC CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004296 frdC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004578 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009996 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008640 frdC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005706 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081451 frdC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004829 frdC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005499 frdC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006246 frdC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009665 frdC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004778 frdC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009148 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003219 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008995 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007509 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007155 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006170 frdC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010500 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007169 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008313 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007288 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005865 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006615 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010045 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005135 frdC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029331 frdC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008564 frdC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009084 frdC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004776 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003839 frdC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004244 frdC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004880 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004878 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004691 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004818 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004555 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004615 frdC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135246 frdC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003412 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004761 frdC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003968 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001205 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004601 frdC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002775 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004892 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064290 frdC CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002282 frdC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002199 frdC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003850 frdC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008997 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146217 frdC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008779 frdC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003449 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004978 frdC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008977 frdC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013612 frdC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012870 frdC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007752 frdC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009113 frdC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008455 frdC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004086 frdC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005837 frdC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008165 frdC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009047 frdC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008344 frdC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004193 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004153 frdC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005497 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004399 frdC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008612 frdC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008673 frdC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006363 frdC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114831 frdC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086119 frdC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005227 frdC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103361 frdC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004797 frdC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008690 frdC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008819 frdC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000606 CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0006504 frdC CDS
Person Approved Go view Shigella boydii 227 ADV-0004687 frdC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010103 frdC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007621 frdC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004968 frdC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075914 frdC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090520 frdC CDS
Person Approved Go view Shigella flexneri 8401 BAG-0004583 frdC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004712 frdC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002156 frdC CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002757 VC2658 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001061 frdC CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001986 frdC CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0001133 b4152 CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002871 frdC CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003041 frdC CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003047 frdC CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235399 frdC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004821 frdC CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004686 frdC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008130 frdC CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002953 frdC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116527 frdC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008362 frdC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006925 frdC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003396 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005651 frdC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004043 frdC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030241 frdC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004771 frdC CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003987 frdC CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004348 frdC CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006895 frdC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007695 frdC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000443 frdC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000512 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004529 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000940 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000486 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21711mutantTn5 InsertionRequest the StrainABE-0013598frdCfrdC::Tn5KAN-I-SceI at position 166 in Plus orientation ,- pKD465Blattner Laboratory
FB21712mutantTn5 InsertionRequest the StrainABE-0013598frdCfrdC::Tn5KAN-I-SceI at position 166 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4374377 to 4384772
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285682repeat_regionforward43744984374596Downstream
ABE-0013580epmBCDScomplement43746294375657Downstream
ABE-0013583efpCDSforward43756994376265Downstream
ABE-0047210ecnACDSforward43763174376442Downstream
ABE-0047211ecnBCDSforward43765534376699Downstream
ABE-0013588gdxCDSforward43768754377192Downstream
ABE-0013590blcCDScomplement43771894377722Downstream
ABE-0013592ampCCDScomplement43778114378944Downstream
ABE-0013595frdDCDScomplement43790074379366Downstream
ABE-0013598frdCCDScomplement43793774379772Matches
ABE-0013602frdBCDScomplement43797834380517Upstream
ABE-0013604frdACDScomplement43805104382318Upstream
ABE-0013610epmACDSforward43826434383620Upstream
ABE-0013613yjeMCDSforward43838394385341Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.