Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013602 (frdB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013602 showshow history
Names
frdB JW4114 ECK4149 b4153
Product
fumarate reductase iron-sulfur protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4379783 4380517 735 245
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001601
EnteroFam0013602: Trusted threshold=745.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR004489 (IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein) Apr 2008
Automated Process Approved IPR012675 (IPR012675 Beta-grasp domain superfamily) Apr 2008
Automated Process Approved IPR012285 (IPR012285 (DEPRECATED) Fumarate reductase, C-terminal) Apr 2008
Automated Process Approved IPR009051 (IPR009051 Alpha-helical ferredoxin) Apr 2008
Automated Process Approved IPR001041 (IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain) Apr 2008
Automated Process Approved IPR006058 (IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site) Apr 2008
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR025192 (IPR025192 Succinate dehydogenase/fumarate reductase N-terminal) Jul 2018
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved IPR036010 (IPR036010 2Fe-2S ferredoxin-like superfamily) Jul 2018
Automated Process Approved PF13085 (PF13085 2Fe-2S iron-sulfur cluster binding domain) Jul 2018
Automated Process Approved PF13183 (PF13183 4Fe-4S dicluster domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004489
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name frdB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW4114 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4149 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4153 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product fumarate reductase iron-sulfur protein Published Annotation - EcoCyc Accession Number: EG10331
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Uncurated alternate product name fumarate reductase, anaerobic, Fe-S subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name fumarate reductase (anaerobic), Fe-S subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name fumarate reductase, anaerobic, iron-sulfur protein subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013602: Trusted threshold=745.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001601
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR036010 2Fe-2S ferredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036010
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein Protein Sequence Similarity - InterPro Domain: IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF13183 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF13183
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF13085 2Fe-2S iron-sulfur cluster binding domain Protein Sequence Similarity - PFAM Model Name: PF13085
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Protein Sequence Similarity - InterPro Domain: IPR006058
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR025192 Succinate dehydogenase/fumarate reductase N-terminal Protein Sequence Similarity - InterPro Domain: IPR025192
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Protein Sequence Similarity - InterPro Domain: IPR001041
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR009051 Alpha-helical ferredoxin Protein Sequence Similarity - InterPro Domain: IPR009051
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012285 (DEPRECATED) Fumarate reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012285
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012675 Beta-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR012675
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 1.3.99.1 Published Annotation - Swiss-Prot Accession Number: P0AC47 Feb 2006
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC47 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1790596 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AC47 Published Annotation - Swiss-Prot Accession Number: P0AC47 Jan 2006
Automated Process Approved db xref ASAP:ABE-0013602 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948666 Published Annotation - Entrez Gene Database ID: 948666
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref EcoGene:EG10331 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note fumarate reductase, anaerobic, iron-sulfur protein subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006113 - fermentation; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC77113.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004489
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004489
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001601 frdB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001612 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001854 frdB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001909 frdB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000695 frdB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001918 frdB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000448 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003567 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000460 frdB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003791 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004039 frdB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000999 frdB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004824 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017841 frdB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003777 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000796 CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0000426 frdB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001108 frdB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006443 frdB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004451 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006806 frdB CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004298 frdB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004577 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009995 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008641 frdB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005705 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081452 frdB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004830 frdB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005500 frdB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006247 frdB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009666 frdB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004779 frdB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009149 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003220 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008996 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007510 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007156 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006169 frdB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010501 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007170 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008314 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007289 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005866 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006616 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010044 frdB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005136 frdB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029332 frdB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008565 frdB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009085 frdB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004777 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004245 frdB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004881 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004879 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004692 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004819 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178984 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004556 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004616 frdB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135247 frdB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003413 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004762 frdB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003969 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001206 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004602 frdB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002776 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004893 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064289 frdB CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002274 frdB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002198 frdB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003849 frdB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008996 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146214 frdB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008780 frdB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003448 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004979 frdB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008978 frdB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013615 frdB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012873 frdB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007751 frdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009114 frdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008454 frdB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004087 frdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005838 frdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008166 frdB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009048 frdB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008345 frdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004194 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004154 frdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005498 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004400 frdB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008611 frdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008674 frdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006364 frdB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114833 frdB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086120 frdB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005228 frdB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103364 frdB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004796 frdB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008689 frdB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008818 frdB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000605 CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0006505 frdB CDS
Person Approved Go view Shigella boydii 227 ADV-0004686 frdB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010104 frdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007622 frdB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004969 frdB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075915 frdB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090521 frdB CDS
Person Approved Go view Shigella flexneri 8401 BAG-0004584 frdB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004713 frdB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002155 frdB CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002756 VC2657 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001062 frdB CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001987 frdB CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0001136 b4153 CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002872 frdB CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003042 frdB CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003048 frdB CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235403 frdB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004820 frdB CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004685 frdB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008129 frdB CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002952 frdB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116532 frdB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008361 frdB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006924 frdB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003395 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005652 frdB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004044 frdB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030242 frdB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004770 frdB CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003986 frdB CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004347 frdB CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006894 frdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007694 frdB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000444 frdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000513 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004528 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000945 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000485 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21713mutantTn5 InsertionRequest the StrainABE-0013602frdBfrdB::Tn5KAN-I-SceI at position 106 in Plus orientation ,- pKD465Blattner Laboratory
FB21714mutantTn5 InsertionRequest the StrainABE-0013602frdBfrdB::Tn5KAN-I-SceI at position 107 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4374783 to 4385517
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013580epmBCDScomplement43746294375657Downstream
ABE-0013583efpCDSforward43756994376265Downstream
ABE-0047210ecnACDSforward43763174376442Downstream
ABE-0047211ecnBCDSforward43765534376699Downstream
ABE-0013588gdxCDSforward43768754377192Downstream
ABE-0013590blcCDScomplement43771894377722Downstream
ABE-0013592ampCCDScomplement43778114378944Downstream
ABE-0013595frdDCDScomplement43790074379366Downstream
ABE-0013598frdCCDScomplement43793774379772Downstream
ABE-0013602frdBCDScomplement43797834380517Matches
ABE-0013604frdACDScomplement43805104382318Overlaps Upstream
ABE-0013610epmACDSforward43826434383620Upstream
ABE-0013613yjeMCDSforward43838394385341Upstream
ABE-0013617yjeNCDSforward43853934385707Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.