Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013621 (mscM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013621 showshow history
Names
mscM JW4120 ECK4155 yjeP b4159
Product
miniconductance mechanosensitive channel
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4386047 4389370 3324 1108
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010920 (IPR010920 LSM domain superfamily) Apr 2008
Automated Process Approved IPR011066 (IPR011066 Mechanosensitive ion channel MscS, C-terminal) Apr 2008
Automated Process Approved IPR006686 (IPR006686 Mechanosensitive ion channel MscS, conserved site) Apr 2008
Automated Process Approved IPR011014 (IPR011014 Mechanosensitive ion channel MscS, transmembrane-2) Apr 2008
Automated Process Approved IPR006685 (IPR006685 Mechanosensitive ion channel MscS) Apr 2008
Automated Process Approved IPR024393 (IPR024393 Mechanosensitive ion channel MscS, porin domain) Jul 2018
Automated Process Approved IPR025692 (IPR025692 Mechanosensitive ion channel inner membrane domain 1) Jul 2018
Automated Process Approved PF12795 (PF12795 Mechanosensitive ion channel porin domain) Jul 2018
Automated Process Approved PF12794 (PF12794 Mechanosensitive ion channel inner membrane domain 1) Jul 2018
Automated Process Approved PF00924 (PF00924 Mechanosensitive ion channel) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006685
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mscM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4155 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4120 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjeP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b4159 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product miniconductance mechanosensitive channel Published Annotation - EcoCyc Accession Number: G7840
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Automated Process Approved alternate product name mechanosensitive channel protein, miniconductance Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name putative periplasmic binding protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted mechanosensitive channel Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR011066 Mechanosensitive ion channel MscS, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006686 Mechanosensitive ion channel MscS, conserved site Protein Sequence Similarity - InterPro Domain: IPR006686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010920 LSM domain superfamily Protein Sequence Similarity - InterPro Domain: IPR010920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR025692 Mechanosensitive ion channel inner membrane domain 1 Protein Sequence Similarity - InterPro Domain: IPR025692
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12794 Mechanosensitive ion channel inner membrane domain 1 Protein Sequence Similarity - PFAM Model Name: PF12794
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00924 Mechanosensitive ion channel Protein Sequence Similarity - PFAM Model Name: PF00924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12795 Mechanosensitive ion channel porin domain Protein Sequence Similarity - PFAM Model Name: PF12795
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024393 Mechanosensitive ion channel MscS, porin domain Protein Sequence Similarity - InterPro Domain: IPR024393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006685 Mechanosensitive ion channel MscS Protein Sequence Similarity - InterPro Domain: IPR006685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Protein Sequence Similarity - InterPro Domain: IPR011014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9.B (transport; Transporters of Unknown Classification; Putative uncharacterized transport protein) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367355 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39285 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948676 Published Annotation - Entrez Gene Database ID: 948676
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39285 Published Annotation - Swiss-Prot Accession Number: P39285 Jan 2005
Automated Process Approved db xref EcoGene:EG12478 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; ions Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative periplasmic binding protein; GO_component: GO:0042597 - periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77119.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006685
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000167 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001221 yjeP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000966 yjeP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000447 mscM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001551 mscM CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000445 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003571 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000463 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003742 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004034 kefA_3 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001003 kefA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004828 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017845 bspA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003773 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000799 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297335 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003387 bspA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003080 bspA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001102 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006447 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004455 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006799 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004304 yjeP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004571 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009985 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008645 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005701 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081456 yjeP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004834 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005506 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006254 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009670 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004783 yjeP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009153 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003225 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009000 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007514 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007160 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006165 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010505 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007174 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008318 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007293 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005870 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006620 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010040 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005140 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029337 yjeP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008569 mscM CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009089 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003845 yjeP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004251 yjeP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004885 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004883 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004698 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004823 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004560 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004622 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135251 yjeP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003418 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004768 yjeP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003972 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001209 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004606 yjeP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002781 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004897 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002690 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003052 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002833 yjeP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001161 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003647 yjeP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000506 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011298 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000331 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288577 yjeP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006564 bspA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064286 bspA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002289 bspA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004228 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003846 bspA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008991 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008785 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003441 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004984 yjeP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008983 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013636 yjeP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012894 yjeP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007746 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009119 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008449 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004091 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005843 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008171 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009053 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008350 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005505 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004405 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008606 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008678 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006368 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114848 yjeP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086125 yjeP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005234 yjeP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103384 yjeP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004791 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008684 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008813 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000601 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264139 CDS
Person Approved Go view Shigella boydii 227 ADV-0004680 yjeP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010110 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007628 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005010 yjeP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075921 yjeP CDS
Person Approved Go view Shigella flexneri 301 ABT-0090526 yjeP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004588 yjeP CDS
Person Approved Go view Shigella sonnei 046 ADD-0004719 yjeP CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002150 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000605 yjeP CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000683 yjeP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001990 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001150 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002875 kefA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003045 kefA_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002454 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235407 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004816 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004680 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008126 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002948 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116546 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008358 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006921 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003392 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005656 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004047 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030245 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004766 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003980 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004342 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006891 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007690 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000447 BspA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000517 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004523 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000960 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000482 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4381047 to 4394370
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013604frdACDScomplement43805104382318Downstream
ABE-0013610epmACDSforward43826434383620Downstream
ABE-0013613yjeMCDSforward43838394385341Downstream
ABE-0013617yjeNCDSforward43853934385707Downstream
ABE-0013619yjeOCDSforward43857044386018Downstream
ABE-0285683repeat_regionforward43860194386038Downstream
ABE-0013621mscMCDScomplement43860474389370Matches
ABE-0013623psdCDScomplement43893924390360Upstream
ABE-0013626rsgACDScomplement43904574391509Upstream
ABE-0013631ornCDSforward43916044392149Upstream
ABE-0013635glyVtRNAforward43923604392435Upstream
ABE-0013637glyXtRNAforward43924724392547Upstream
ABE-0013639glyYtRNAforward43925834392658Upstream
ABE-0285214yjeVCDSforward43928924392945Upstream
ABE-0013641queGCDScomplement43929284394067Upstream
ABE-0013644nnrCDSforward43940664395613Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.