Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013623 (psd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013623 showshow history
Names
psd JW4121 ECK4156 b4160
Product
phosphatidylserine decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4389392 4390360 969 323
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001603
EnteroFam0013623: Trusted threshold=729.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005221 (IPR005221 (DEPRECATED) Phosphatidylserine decarboxylase) Apr 2008
Automated Process Approved IPR003817 (IPR003817 Phosphatidylserine decarboxylase-related) Apr 2008
Automated Process Approved IPR033177 (IPR033177 Phosphatidylserine decarboxylase) Jul 2018
Automated Process Approved PF02666 (PF02666 Phosphatidylserine decarboxylase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004609 phosphatidylserine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name psd Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4156 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4121 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4160 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphatidylserine decarboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphatidylserine decarboxylase; phospholipid synthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013623: Trusted threshold=729.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001603
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02666 Phosphatidylserine decarboxylase Protein Sequence Similarity - PFAM Model Name: PF02666
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003817 Phosphatidylserine decarboxylase-related Protein Sequence Similarity - InterPro Domain: IPR003817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR033177 Phosphatidylserine decarboxylase Protein Sequence Similarity - InterPro Domain: IPR033177
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005221 (DEPRECATED) Phosphatidylserine decarboxylase Protein Sequence Similarity - InterPro Domain: IPR005221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.1.65 Published Annotation - Swiss-Prot Accession Number: P0A8K1 Feb 2006
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948673 Published Annotation - Entrez Gene Database ID: 948673
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A8K1 Published Annotation - Swiss-Prot Accession Number: P0A8K1 Jan 2006
Automated Process Approved db xref GI:1790604 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8K1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013623 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10775 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule synthesis, modification: Phospholipids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphatidylserine decarboxylase; phospholipid synthesis; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77120.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004609 phosphatidylserine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001603 psd CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001615 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000614 psd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000366 psd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000398 psd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000308 psd CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000444 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003572 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000464 psd CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003741 psd CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004033 psd CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001004 psd CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004830 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017847 psd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003772 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000800 psd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297339 psd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003386 psd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003079 psd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001101 psd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006448 psd CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004456 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006798 psd CDS
Person Uncurated Go view Escherichia coli ABU 83972 (UPEC) ANS-0018593 psd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005409 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004570 psd CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009984 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008646 psd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005700 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081458 psd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004835 psd CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005507 psd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006255 psd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009671 psd CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004784 psd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009154 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003227 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009001 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007515 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007161 psd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010506 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007175 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008319 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007294 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005871 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006621 psd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010039 psd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005141 psd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029338 psd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008570 psd CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009090 psd CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004782 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003846 psd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004252 psd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004886 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004884 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004699 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004825 psd CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178993 psd CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004561 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004623 psd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135252 psd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003420 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004769 psd CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003973 psd CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001210 psd CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004607 psd CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002782 psd CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004899 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002689 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003053 psd CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002832 psd CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001162 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003646 psd CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000507 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011297 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000330 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288578 psd CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006563 psd CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064285 psd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003898 psd CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004230 psd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003845 psd CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008990 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147271 psd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008786 psd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003440 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004985 psd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008984 psd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013641 psd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012899 psd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007745 psd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009120 psd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008448 psd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004092 psd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005844 psd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008172 psd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009054 psd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008351 psd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004200 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004160 psd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005506 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004406 psd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008605 psd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008679 psd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006369 psd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114851 psd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086126 psd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005235 psd CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103387 psd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004790 psd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008683 psd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008812 psd CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000600 psd CDS
Person Approved Go view Shigella boydii 227 ADV-0004679 psd CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010111 psd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007629 psd CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005009 psd CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075922 psd CDS
Person Approved Go view Shigella flexneri 301 ABT-0090527 psd CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004589 psd CDS
Person Approved Go view Shigella sonnei 046 ADD-0004720 psd CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002149 psd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000364 VC0339 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000606 psd CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000684 psd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001991 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001154 psd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002876 psd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003714 psd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002453 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235421 psd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004815 psd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004679 psd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008125 psd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002947 psd CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116559 psd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008357 psd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006920 psd CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003391 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005657 psd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004048 psd CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030246 psd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004765 psd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003979 psd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004341 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006890 psd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007689 psd CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000448 psd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000519 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004522 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000964 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000481 psd CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4384392 to 4395360
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013613yjeMCDSforward43838394385341Downstream
ABE-0013617yjeNCDSforward43853934385707Downstream
ABE-0013619yjeOCDSforward43857044386018Downstream
ABE-0285683repeat_regionforward43860194386038Downstream
ABE-0013621mscMCDScomplement43860474389370Downstream
ABE-0013623psdCDScomplement43893924390360Matches
ABE-0013626rsgACDScomplement43904574391509Upstream
ABE-0013631ornCDSforward43916044392149Upstream
ABE-0013635glyVtRNAforward43923604392435Upstream
ABE-0013637glyXtRNAforward43924724392547Upstream
ABE-0013639glyYtRNAforward43925834392658Upstream
ABE-0285214yjeVCDSforward43928924392945Upstream
ABE-0013641queGCDScomplement43929284394067Upstream
ABE-0013644nnrCDSforward43940664395613Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.