Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013626 (rsgA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013626 showshow history
Names
rsgA engC yjeQ JW4122 ECK4157 b4161
Product
ribosome small subunit-dependent GTPase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4390457 4391509 1053 351
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001604
EnteroFam0013626: Trusted threshold=906.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004881 (IPR004881 Ribosome biogenesis GTPase RsgA) Apr 2008
Automated Process Approved IPR010914 (IPR010914 RsgA GTPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF03193 (PF03193 RsgA GTPase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rsgA Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4122 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjeQ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK4157 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym engC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4161 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ribosome small subunit-dependent GTPase A Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013626: Trusted threshold=906.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001604
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004881 Ribosome biogenesis GTPase RsgA Protein Sequence Similarity - InterPro Domain: IPR004881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010914 RsgA GTPase domain Protein Sequence Similarity - InterPro Domain: IPR010914
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03193 RsgA GTPase Protein Sequence Similarity - PFAM Model Name: PF03193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.6.1.- Published Annotation - Swiss-Prot Accession Number: P39286 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12479 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39286 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948674 Published Annotation - Entrez Gene Database ID: 948674
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39286 Published Annotation - Swiss-Prot Accession Number: P39286 Jan 2005
Automated Process Approved db xref GI:87082381 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013626 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77121.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001604 rsgA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001616 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000995 rsgA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000842 rsgA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000893 rsgA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000409 rsgA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000443 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003573 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000465 rsgA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003740 rsgA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004032 rsgA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001005 rsgA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004831 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017848 rsgA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003771 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000801 rsgA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297341 engC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003385 yjeQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003078 engC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001100 rsgA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006449 rsgA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004457 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006797 rsgA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004306 yjeQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004569 rsgA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009983 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008647 rsgA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005699 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081459 rsgA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004836 rsgA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005508 rsgA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006256 rsgA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009672 rsgA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004785 rsgA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009155 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003228 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009002 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007516 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007162 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006163 rsgA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010507 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007176 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008320 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007295 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005872 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006622 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010038 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005142 rsgA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029339 rsgA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008571 rsgA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009091 rsgA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004783 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003847 rsgA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004253 rsgA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004887 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004885 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004700 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004826 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178994 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004562 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004624 rsgA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135253 rsgA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003421 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004770 yjeQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003974 rsgA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001211 rsgA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004608 yjeQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002783 rsgA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004900 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002688 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003054 CDS
Person Uncurated Go view Pantoea ananatis AJ13355 AOV-0002831 engC pseudogene
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001163 CDS
Person Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003645 engC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000508 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011296 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000329 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288579 rsgA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006562 yjeQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064284 rsgA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002288 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002196 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003844 rsgA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008989 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147268 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005029 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008787 rsgA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003438 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004986 yjeQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008985 rsgA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013643 yjeQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012901 yjeQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007744 rsgA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009121 rsgA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008447 rsgA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004093 rsgA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005845 rsgA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008173 rsgA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009055 rsgA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008352 rsgA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004201 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004161 rsgA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005507 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004407 rsgA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008604 rsgA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008680 rsgA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006370 rsgA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114852 rsgA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086127 rsgA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005236 yjeQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103389 rsgA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004789 rsgA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008682 rsgA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008811 rsgA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000599 rsgA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264142 CDS
Person Approved Go view Shigella boydii 227 ADV-0004678 yjeQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010112 rsgA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007630 rsgA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005008 yjeQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075923 rsgA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090528 rsgA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004590 yjeQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004721 rsgA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002148 rsgA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000365 VC0340 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000685 yjeQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001992 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001156 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002877 rsgA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003713 rsgA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002452 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235422 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004814 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004678 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008124 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002946 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116560 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008356 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006919 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005658 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004049 rsgA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030248 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004764 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003978 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004339 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006889 rsgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007688 rsgA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000449 rsgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000520 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004521 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000966 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000480 rsgA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4385457 to 4396509
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013617yjeNCDSforward43853934385707Downstream
ABE-0013619yjeOCDSforward43857044386018Downstream
ABE-0285683repeat_regionforward43860194386038Downstream
ABE-0013621mscMCDScomplement43860474389370Downstream
ABE-0013623psdCDScomplement43893924390360Downstream
ABE-0013626rsgACDScomplement43904574391509Matches
ABE-0013631ornCDSforward43916044392149Upstream
ABE-0013635glyVtRNAforward43923604392435Upstream
ABE-0013637glyXtRNAforward43924724392547Upstream
ABE-0013639glyYtRNAforward43925834392658Upstream
ABE-0285214yjeVCDSforward43928924392945Upstream
ABE-0013641queGCDScomplement43929284394067Upstream
ABE-0013644nnrCDSforward43940664395613Upstream
ABE-0013649tsaECDSforward43955854396046Upstream
ABE-0013653amiBCDSforward43960654397402Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.