Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013653 (amiB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013653 showshow history
Names
amiB yjeD JW4127 ECK4165 b4169
Product
N-acetylmuramoyl-l-alanine amidase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4396065 4397402 1338 446
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001609
EnteroFam0013653: Trusted threshold=879; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002508 (IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain) Apr 2008
Automated Process Approved PF01520 (PF01520 N-acetylmuramoyl-L-alanine amidase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name amiB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4165 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4127 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjeD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4169 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product N-acetylmuramoyl-l-alanine amidase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name N-acetylmuramoyl-l-alanine amidase II; a murein hydrolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013653: Trusted threshold=879; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001609
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR002508
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01520 N-acetylmuramoyl-L-alanine amidase Protein Sequence Similarity - PFAM Model Name: PF01520
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.1.28 Published Annotation - Swiss-Prot Accession Number: P26365 Feb 2006
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11363 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790611 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948683 Published Annotation - Entrez Gene Database ID: 948683
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26365 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013653 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P26365 Published Annotation - Swiss-Prot Accession Number: P26365 Jan 2005
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note N-acetylmuramoyl-l-alanine amidase II; a murein hydrolase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77126.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001609 amiB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001623 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000545 amiB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000431 amiB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000538 amiB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000887 amiB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000470 amiB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003734 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004024 amiB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001013 amiB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004957 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015212 amiB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003741 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297358 amiB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003071 amiB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001092 amiB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008880 amiB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004466 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006789 amiB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004312 amiB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004564 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009974 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006140 amiB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005691 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081467 amiB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004844 amiB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005515 amiB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009554 amiB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009949 amiB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004793 amiB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009163 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003233 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009010 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007524 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007169 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009590 amiB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010515 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006757 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008328 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006686 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005880 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009534 amiB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005150 amiB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029347 amiB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009860 amiB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009099 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003852 amiB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004261 amiB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004893 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004891 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004706 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004834 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178999 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004570 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004632 amiB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135261 amiB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001182 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004778 amiB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004617 amiB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002788 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004970 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002683 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003059 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002823 amiB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001169 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003640 amiB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000516 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011291 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000324 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288584 amiB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006554 amiB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064253 amiB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003264 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003169 amiB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003832 amiB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008945 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147236 amiB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008796 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003428 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005000 amiB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008994 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013667 amiB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012922 amiB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007735 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009130 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008440 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004102 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005853 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008182 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009064 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006316 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004209 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004170 amiB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005516 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004416 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009142 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008688 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008874 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114869 amiB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086135 amiB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005246 amiB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103410 amiB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004780 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008673 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009205 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000593 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264155 amiB CDS
Person Approved Go view Shigella boydii 227 ADV-0004669 amiB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010119 amiB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007410 amiB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004995 amiB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075932 amiB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090537 amiB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004599 amiB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004729 amiB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000377 VC0344 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000713 amiB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001997 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001174 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002078 amiB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003708 amiB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002446 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235431 amiB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004807 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004670 amiB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008116 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002941 amiB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116573 amiB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008348 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006912 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002090 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005664 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004057 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030255 amiB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004757 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003970 amiB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004332 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006882 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007679 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000457 amiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000528 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004511 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001000 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000475 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21717mutantTn5 InsertionRequest the StrainABE-0013653amiBamiB::Tn5KAN-I-SceI at position 529 in Plus orientation ,- pKD465Blattner Laboratory
FB21718mutantTn5 InsertionRequest the StrainABE-0013653amiBamiB::Tn5KAN-I-SceI at position 529 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4391065 to 4402402
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013626rsgACDScomplement43904574391509Upstream
ABE-0013631ornCDSforward43916044392149Upstream
ABE-0013635glyVtRNAforward43923604392435Upstream
ABE-0013637glyXtRNAforward43924724392547Upstream
ABE-0013639glyYtRNAforward43925834392658Upstream
ABE-0285214yjeVCDSforward43928924392945Upstream
ABE-0013641queGCDScomplement43929284394067Upstream
ABE-0013644nnrCDSforward43940664395613Upstream
ABE-0013649tsaECDSforward43955854396046Upstream
ABE-0013653amiBCDSforward43960654397402Matches
ABE-0013655mutLCDSforward43974124399259Downstream
ABE-0013657miaACDSforward43992524400202Downstream
ABE-0013659hfqCDSforward44002884400596Downstream
ABE-0013661hflXCDSforward44006724401952Downstream
ABE-0013663hflKCDSforward44020384403297Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.