Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013672 (purA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013672 showshow history
Names
purA JW4135 ECK4173 b4177
Product
adenylosuccinate synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4404687 4405985 1299 433
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001617
EnteroFam0013672: Trusted threshold=1272.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001114 (IPR001114 Adenylosuccinate synthetase) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00709 (PF00709 Adenylosuccinate synthetase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006164 purine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004019 adenylosuccinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW4135 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4173 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4177 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product adenylosuccinate synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name adenylosuccinate synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013672: Trusted threshold=1272.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001617
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001114 Adenylosuccinate synthetase Protein Sequence Similarity - InterPro Domain: IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00709 Adenylosuccinate synthetase Protein Sequence Similarity - PFAM Model Name: PF00709
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.4.4 Published Annotation - Swiss-Prot Accession Number: P0A7D4 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013672 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10790 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7D4 Published Annotation - Swiss-Prot Accession Number: P0A7D4 Jan 2006
Automated Process Approved db xref GI:1790620 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948695 Published Annotation - Entrez Gene Database ID: 948695
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7D4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77134.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006164 purine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004019 adenylosuccinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001617 purA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001631 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000431 purA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000310 purA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000564 purA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000726 purA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002992 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003645 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129836 purA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105237 purA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104683 purA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000478 purA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003726 purA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004016 purA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001021 purA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004967 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015203 purA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003733 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000814 purA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297384 purA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003371 purA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003063 purA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001084 purA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008872 purA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004474 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006781 purA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004319 purA CDS
Person Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0005180 purA pseudogene
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009965 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006132 purA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005682 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081475 purA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004852 purA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005523 purA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009546 purA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009957 purA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004801 purA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009173 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003242 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009018 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007532 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007177 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009581 purA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010523 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006749 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008336 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006694 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005888 purA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006030 purA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009542 purA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005158 purA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029355 purA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009852 purA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009108 purA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004802 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003860 purA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004269 purA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004901 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004899 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004714 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004842 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179009 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004578 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004640 purA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135269 purA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001191 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004786 purA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003987 purA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001224 purA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004626 purA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002796 purA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004980 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002675 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003067 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002815 purA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001177 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003632 purA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000524 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011283 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000316 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288592 purA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006546 purA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064245 purA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002308 purA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001016 purA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003824 purA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008936 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147221 purA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005015 purA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008804 purA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003420 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005008 purA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009002 purA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013690 purA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012945 purA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007727 purA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009138 purA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004110 purA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008190 purA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009072 purA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006308 purA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004216 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004178 purA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005524 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004424 purA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008696 purA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114885 purA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086143 purA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005255 purA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103436 purA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004772 purA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000584 purA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267580 purA CDS
Person Approved Go view Shigella boydii 227 ADV-0004661 purA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010127 purA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007418 purA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004987 purA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075940 purA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090545 purA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004607 purA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004737 purA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002135 purA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002701 VC2602 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000339 purA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000728 purA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003581 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001198 adeK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002086 purA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003700 purA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002438 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235447 purA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004799 purA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004661 purA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008108 purA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002933 purA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116597 purA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008340 purA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006904 purA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001839 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005672 purA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004065 purA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030263 purA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004749 purA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003961 purA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004323 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006874 purA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007671 purA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000465 purA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000539 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004501 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001045 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000466 purA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4399687 to 4410985
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013657miaACDSforward43992524400202Upstream
ABE-0013659hfqCDSforward44002884400596Upstream
ABE-0013661hflXCDSforward44006724401952Upstream
ABE-0013663hflKCDSforward44020384403297Upstream
ABE-0013665hflCCDSforward44033004404304Upstream
ABE-0013669yjeTCDSforward44043864404583Upstream
ABE-0013672purACDSforward44046874405985Matches
ABE-0013676nsrRCDSforward44061904406615Downstream
ABE-0013678rnrCDSforward44066544409095Downstream
ABE-0285684repeat_regionforward44091534409250Downstream
ABE-0013684rlmBCDSforward44092754410006Downstream
ABE-0013687yjfICDSforward44101334410534Downstream
ABE-0013689yjfJCDSforward44105534411251Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.