Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013727 (ulaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013727 showshow history
Names
ulaC sgaA yjfU ptxA JW4153 ECK4191 b4195
Product
PTS system L-ascorbate-specific IIA component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4421708 4422172 465 155
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002178 (IPR002178 PTS EIIA type-2 domain) Apr 2008
Automated Process Approved IPR008162 (IPR008162 Inorganic pyrophosphatase) Apr 2008
Automated Process Approved IPR016152 (IPR016152 Phosphotransferase/anion transporter) Jul 2018
Automated Process Approved PF00359 (PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006796 phosphate-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004427 inorganic diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ulaC Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4153 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ptxA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved synonym sgaA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yjfU Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4191 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4195 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system L-ascorbate-specific IIA component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Protein Family
Automated Process Approved protein family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Protein Sequence Similarity - PFAM Model Name: PF00359
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008162 Inorganic pyrophosphatase Protein Sequence Similarity - InterPro Domain: IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016152 Phosphotransferase/anion transporter Protein Sequence Similarity - InterPro Domain: IPR016152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002178 PTS EIIA type-2 domain Protein Sequence Similarity - InterPro Domain: IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved EC number 2.7.1.69 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P69820 Feb 2006
Person Uncurated MultiFun 4.4.A.2 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Fructose-Mannitol (Fru) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12495 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367359 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948715 Published Annotation - Entrez Gene Database ID: 948715
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P69820 Published Annotation - Swiss-Prot Accession Number: P69820 Jan 2006
Automated Process Approved db xref ASAP:ABE-0013727 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69820 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative PTS system enzyme II A component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77152.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 7.88
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006796 phosphate-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004427 inorganic diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002405 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000062 ulaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000058 ulaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003520 ulaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002330 ulaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002469 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002313 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003714 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001033 ulaC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004725 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000828 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001070 ulaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008854 ulaC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004492 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006765 ulaC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005450 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004537 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009945 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006111 ulaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005664 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081497 ulaC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004878 ulaC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005541 ulaC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009528 ulaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009975 ulaC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004819 ulaC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009192 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003260 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009036 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007550 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007195 ulaC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010541 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006731 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008354 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006712 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005906 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006048 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009560 ulaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005176 ulaC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029373 ulaC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005772 ulaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009127 ulaC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003878 ulaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004287 ulaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004920 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004920 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004734 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004862 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179029 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004597 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004658 ulaC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135287 ulaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001209 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004804 sgaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003459 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000458 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004638 ptxA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002810 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004486 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002343 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008823 ulaC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003404 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005027 ptxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009021 ulaC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013754 ptxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013001 ptxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007707 ulaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009157 ulaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008745 ulaC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004130 ulaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005881 ulaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008209 ulaC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009091 ulaC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006288 ulaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004235 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004197 sgaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005544 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004444 ulaC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008787 ulaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008715 ulaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008817 ulaC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114918 sgaA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086162 sgaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005274 ptxA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103493 ptxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004753 ulaC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008643 ulaC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009042 ulaC CDS
Person Approved Go view Shigella boydii 227 ADV-0004641 ptxA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010144 ulaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007439 ulaC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004931 ptxA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075963 ptxA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090563 ptxA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004624 ptxA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004753 ulaC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002118 ulaC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003134 VCA0245 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002648 ulaC_1 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001094 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000451 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4416708 to 4427172
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013706bsmACDScomplement44164414416770Upstream
ABE-0013711yjfPCDSforward44169524417701Upstream
ABE-0013713ulaRCDScomplement44176984418453Upstream
ABE-0013717ulaGCDScomplement44185614419625Upstream
ABE-0013723ulaACDSforward44199804421377Upstream
ABE-0013725ulaBCDSforward44213934421698Upstream
ABE-0013727ulaCCDSforward44217084422172Matches
ABE-0013729ulaDCDSforward44221864422836Downstream
ABE-0013732ulaECDSforward44228464423700Downstream
ABE-0013734ulaFCDSforward44237004424386Downstream
ABE-0013736yjfYCDScomplement44245164424791Downstream
ABE-0013740rpsFCDSforward44251184425513Downstream
ABE-0013742priBCDSforward44255204425834Downstream
ABE-0013744rpsRCDSforward44258394426066Downstream
ABE-0013746rplICDSforward44261084426557Downstream
ABE-0013748yjfZCDScomplement44266284427422Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.