Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013732 (ulaE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013732 showshow history
Names
ulaE yjfW sgaU JW4155 ECK4193 b4197
Product
L-ribulose-5-phosphate 3-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4422846 4423700 855 285
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Apr 2008
Automated Process Approved IPR004560 (IPR004560 L-ribulose-5-phosphate 3-epimerase) Apr 2008
Automated Process Approved IPR013022 (IPR013022 Xylose isomerase-like, TIM barrel domain) Jul 2018
Automated Process Approved IPR036237 (IPR036237 Xylose isomerase-like superfamily) Jul 2018
Automated Process Approved PF01261 (PF01261 Xylose isomerase-like TIM barrel) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ulaE Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4155 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym sgaU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK4193 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjfW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4197 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-ribulose-5-phosphate 3-epimerase Protein Sequence Similarity - InterPro Domain: IPR004560
Reference: Escherichia coli K-12 MG1655 		May 2020
Person Uncurated alternate product name L-xylulose 5-phosphate 3-epimerase Experimental - PubMed ID: 11741871
Reference: Escherichia coli K-12 MG1655 		May 2020
Protein Family
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004560 L-ribulose-5-phosphate 3-epimerase Protein Sequence Similarity - InterPro Domain: IPR004560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013022 Xylose isomerase-like, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR013022
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01261 Xylose isomerase-like TIM barrel Protein Sequence Similarity - PFAM Model Name: PF01261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036237 Xylose isomerase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 5.3.1.- Published Annotation - Database Name: EC2GO: GO:0016861
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved EC number 5.1.3.22 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved EC number 5.-.-.- Published Annotation - Swiss-Prot Accession Number: P39305 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39305 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013732 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948712 Published Annotation - Entrez Gene Database ID: 948712
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12497 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790641 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39305 Published Annotation - Swiss-Prot Accession Number: P39305 Jan 2005
Automated Process Approved note putative hexulose-6-phosphate isomerase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77154.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002406 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002763 ulaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003003 ulaE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004989 ulaE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002839 ulaE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002467 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002315 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003712 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001035 ulaE_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000830 CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0001068 ulaE CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008852 ulaE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004494 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0006763 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004339 ulaE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004535 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009943 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0006109 ulaE CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0005662 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081500 ulaE CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004881 ulaE pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005543 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0009526 ulaE CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009977 ulaE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004821 ulaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009195 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0003263 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0009038 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0007552 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007197 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009561 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010543 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0006729 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0008356 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006714 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0005908 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0006050 ulaE CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0009562 ulaE CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0005178 ulaE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029375 ulaE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005770 ulaE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009129 ulaE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004824 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003880 ulaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004289 ulaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004922 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004918 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004736 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004865 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179031 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004599 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004660 ulaE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135289 ulaE CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0001212 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004806 sgaU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003457 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000460 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004640 sgaU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002812 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0008825 ulaE CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0003401 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005029 sgaU CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0009023 ulaE CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0013760 sgaU CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0013007 sgaU CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007705 ulaE CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0009159 ulaE CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0008747 ulaE CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0004132 ulaE CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0005883 ulaE CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0008211 ulaE CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0009093 ulaE CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0006286 ulaE CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0004237 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004199 sgaU CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0005546 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0004446 ulaE CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0008785 ulaE CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0008717 ulaE CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0008819 ulaE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114922 sgaU CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086164 sgaU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005276 sgaU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103499 sgaU CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0004751 ulaE CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0008641 ulaE CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0009044 ulaE CDS
Person Approved Go view Shigella boydii 227 ADV-0004639 sgaU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010146 ulaE CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007441 ulaE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075965 sgaU CDS
Person Approved Go view Shigella flexneri 301 ABT-0090565 sgaU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004626 sgaU CDS
Person Approved Go view Shigella sonnei 046 ADD-0004755 ulaE CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001103 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000449 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22220mutantTn5 InsertionRequest the StrainABE-0013732ulaEsgaU::Tn5KAN-I-SceI at position 260 in Minus orientation ,+ pKD460Blattner Laboratory
FB22943mutantTn5 InsertionRequest the StrainABE-0013732ulaEsgaU::Tn5(KAN-I-SceI) at position 260 in Minus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4417846 to 4428700
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013713ulaRCDScomplement44176984418453Upstream
ABE-0013717ulaGCDScomplement44185614419625Upstream
ABE-0013723ulaACDSforward44199804421377Upstream
ABE-0013725ulaBCDSforward44213934421698Upstream
ABE-0013727ulaCCDSforward44217084422172Upstream
ABE-0013729ulaDCDSforward44221864422836Upstream
ABE-0013732ulaECDSforward44228464423700Matches
ABE-0013734ulaFCDSforward44237004424386Overlaps Downstream
ABE-0013736yjfYCDScomplement44245164424791Downstream
ABE-0013740rpsFCDSforward44251184425513Downstream
ABE-0013742priBCDSforward44255204425834Downstream
ABE-0013744rpsRCDSforward44258394426066Downstream
ABE-0013746rplICDSforward44261084426557Downstream
ABE-0013748yjfZCDScomplement44266284427422Downstream
ABE-0013754ytfApseudogeneforward44276934428095Downstream
ABE-0013756ytfBCDScomplement44280794428717Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.