Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013782 (cpdB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013782 showshow history
Names
cpdB JW4171 ECK4209 b4213
Product
2':3'-cyclic-nucleotide 2'-phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4434622 4436565 1944 648
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001632
EnteroFam0013782: Trusted threshold=1773.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR006179 (IPR006179 5'-Nucleotidase/apyrase) Apr 2008
Automated Process Approved IPR008334 (IPR008334 5'-Nucleotidase, C-terminal) Apr 2008
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Apr 2008
Automated Process Approved IPR006294 (IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase) Apr 2008
Automated Process Approved IPR006146 (IPR006146 5'-Nucleotidase, conserved site) Apr 2008
Automated Process Approved IPR036907 (IPR036907 5'-Nucleotidase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00149 (PF00149 Calcineurin-like phosphoesterase) Jul 2018
Automated Process Approved PF02872 (PF02872 5'-nucleotidase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cpdB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW4171 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4209 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4213 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2':3'-cyclic-nucleotide 2'-phosphodiesterase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013782: Trusted threshold=1773.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001632
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR006179 5'-Nucleotidase/apyrase Protein Sequence Similarity - InterPro Domain: IPR006179
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR008334 5'-Nucleotidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008334
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00149 Calcineurin-like phosphoesterase Protein Sequence Similarity - PFAM Model Name: PF00149
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02872 5'-nucleotidase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02872
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036907 5'-Nucleotidase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036907
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR006146 5'-Nucleotidase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006146
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Protein Sequence Similarity - InterPro Domain: IPR006294
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 3.1.4.16 Published Annotation - Swiss-Prot Accession Number: P08331 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08331 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P08331 Published Annotation - Swiss-Prot Accession Number: P08331 Jan 2005
Automated Process Approved db xref EcoGene:EG10160 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0013782 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1790658 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948729 Published Annotation - Entrez Gene Database ID: 948729
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC77170.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001632 cpdB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001959 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001559 cpdB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001723 cpdB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000102 cpdB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001837 cpdB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003253 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000505 cpdB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003696 cpdB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003993 cpdB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001053 cpdB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005305 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014806 cpdB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003452 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000850 cpdB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297428 cpdB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003357 cpdB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003048 cpdB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001045 cpdB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007001 cpdB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004519 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006740 cpdB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004363 cpdB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004512 cpdB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009915 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006087 cpdB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007486 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081525 cpdB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004896 cpdB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005562 cpdB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008359 cpdB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007296 cpdB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004846 cpdB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009220 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009055 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007569 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009254 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009202 cpdB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010560 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006713 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008373 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006731 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005924 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006067 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005538 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005194 cpdB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029394 cpdB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005747 cpdB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009155 cpdB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004847 cpdB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003895 cpdB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004305 cpdB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004946 cpdB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004760 cpdB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004890 cpdB CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179654 cpdB pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0004623 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004684 cpdB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135308 cpdB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001232 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004831 cpdB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004000 cpdB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001241 cpdB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004657 cpdB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002837 cpdB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005304 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002660 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003083 cpdB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002801 cpdB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001194 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003617 cpdB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000539 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011268 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000301 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290254 cpdB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006531 cpdB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063916 cpdB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002098 cpdB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000929 cpdB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004040 cpdB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008594 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145764 cpdB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008841 cpdB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003382 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005047 cpdB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009040 cpdB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013814 cpdB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013060 cpdB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007040 cpdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009175 cpdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007746 cpdB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004148 cpdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007125 cpdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008227 cpdB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009111 cpdB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006269 cpdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004255 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004217 cpdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005566 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004461 cpdB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006611 cpdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008733 cpdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004062 cpdB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114957 cpdB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086182 cpdB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005294 cpdB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103546 cpdB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004736 cpdB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007453 cpdB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005520 cpdB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000566 cpdB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267201 cpdB CDS
Person Approved Go view Shigella boydii 227 ADV-0004608 cpdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006599 cpdB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004952 cpdB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075870 cpdB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090482 cpdB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004542 cpdB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004775 cpdB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002661 VC2562 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006750 cpdB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000968 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001243 cpdB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002101 cpdB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002581 cpdB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002422 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235476 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008080 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000102 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008088 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003708 cpdB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127212 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007832 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008529 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001312 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006793 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004085 cpdB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030283 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006489 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003939 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004303 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007448 cpdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007654 cpdB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000481 cpdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000558 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004481 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001167 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000432 cpdB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22944mutantTn5 InsertionRequest the StrainABE-0013782cpdBcpdB::Tn5(KAN-I-SceI) at position 969 in Minus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4429622 to 4441565
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013764cycACDSforward44298644431276Downstream
ABE-0285686repeat_regionforward44312894431313Downstream
ABE-0013766ytfECDScomplement44313214431983Downstream
ABE-0013769ytfFCDScomplement44320914433056Downstream
ABE-0013773qorBCDScomplement44331644434024Downstream
ABE-0013777ytfHCDSforward44341134434493Downstream
ABE-0285687repeat_regionforward44344964434606Downstream
ABE-0013782cpdBCDScomplement44346224436565Matches
ABE-0013786cysQCDSforward44367554437495Upstream
ABE-0013790ytfICDSforward44377074438645Upstream
ABE-0013792ytfJCDScomplement44387084439262Upstream
ABE-0013797ytfKCDSforward44395874439793Upstream
ABE-0013799paeACDScomplement44398724441215Upstream
ABE-0285688repeat_regionforward44413934441490Upstream
ABE-0013804msrACDScomplement44415384442176Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.