Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013786 (cysQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013786 showshow history
Names
cysQ JW4172 ECK4210 amtA amt b4214
Product
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4436755 4437495 741 247
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001633
EnteroFam0013786: Trusted threshold=681.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000760 (IPR000760 Inositol monophosphatase-like) Apr 2008
Automated Process Approved IPR006240 (IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ) Apr 2008
Automated Process Approved PF00459 (PF00459 Inositol monophosphatase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046854 phosphatidylinositol phosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000760
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004437 (OBSOLETE) inositol or phosphatidylinositol phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000760
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym amt Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW4172 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym amtA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK4210 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4214 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name gene product acts on 3'-phosphoadenosine-5'-phosphosulfate Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013786: Trusted threshold=681.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001633
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ Protein Sequence Similarity - InterPro Domain: IPR006240
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00459 Inositol monophosphatase family Protein Sequence Similarity - PFAM Model Name: PF00459
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000760 Inositol monophosphatase-like Protein Sequence Similarity - InterPro Domain: IPR000760
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.7 Protein Sequence Similarity - InterPro Domain: IPR006240
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10043 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22255 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790659 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948728 Published Annotation - Entrez Gene Database ID: 948728
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P22255 Published Annotation - Swiss-Prot Accession Number: P22255 Jan 2005
Automated Process Approved db xref ASAP:ABE-0013786 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function phenotype; Central intermediary metabolism: Sulfur metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77171.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046854 phosphatidylinositol phosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000760
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004437 (OBSOLETE) inositol or phosphatidylinositol phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000760
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001633 cysQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002047 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000543 cysQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000630 cysQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000527 cysQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000945 cysQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003254 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129831 cysQ CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000506 cysQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003695 cysQ CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003992 cysQ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001054 cysQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005307 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014808 cysQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003451 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000851 cysQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297434 cysQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003356 cysQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003047 cysQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001044 cysQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007000 cysQ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004520 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006739 cysQ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004366 cysQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004511 cysQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009914 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006086 cysQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007487 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081526 cysQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004897 cysQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008358 cysQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007297 cysQ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004847 cysQ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009221 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003476 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009056 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007570 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009255 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009201 cysQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010561 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006712 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008374 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006732 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005925 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006068 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005539 cysQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005195 cysQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029395 cysQ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005746 cysQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009156 cysQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004306 cysQ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004624 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004685 cysQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135309 cysQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001233 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004832 cysQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004001 cysQ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001242 cysQ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004658 cysQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002838 cysQ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005306 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002659 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003084 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002800 cysQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001195 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003616 cysQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000540 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011267 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000300 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290255 cysQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006530 cysQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063915 cysQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002134 cysQ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002107 cysQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004039 cysQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008593 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147174 cysQ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005481 cysQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008843 cysQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003380 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005048 cysQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009041 cysQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013820 cysQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013066 cysQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007038 cysQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009177 cysQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007744 cysQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004149 cysQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007126 cysQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008228 cysQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009113 cysQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006268 cysQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004256 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004218 cysQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005568 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004463 cysQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006609 cysQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008734 cysQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004063 cysQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114961 cysQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086183 cysQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005296 cysQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103553 cysQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004735 cysQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007452 cysQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005522 cysQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000565 cysQ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265221 cysQ-2 CDS
Person Approved Go view Shigella boydii 227 ADV-0004607 cysQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010177 cysQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006598 cysQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004955 cysQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075869 cysQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0090481 cysQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004541 cysQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004776 cysQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002821 VC2722 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000751 cysQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000969 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001249 amtA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002102 amtA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002580 cysQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002421 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235477 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008081 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000101 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008087 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003707 cysQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127207 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007833 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008530 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006794 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004086 cysQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030284 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006490 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003938 cysQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004302 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007449 cysQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007653 cysQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000482 cysQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000560 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004480 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001173 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000431 cysQ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21739mutantTn5 InsertionRequest the StrainABE-0013786cysQcysQ::Tn5KAN-I-SceI at position 324 in Minus orientation ,+ pKD460Blattner Laboratory
FB21740mutantTn5 InsertionRequest the StrainABE-0013786cysQcysQ::Tn5KAN-I-SceI at position 324 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4431755 to 4442495
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013766ytfECDScomplement44313214431983Upstream
ABE-0013769ytfFCDScomplement44320914433056Upstream
ABE-0013773qorBCDScomplement44331644434024Upstream
ABE-0013777ytfHCDSforward44341134434493Upstream
ABE-0285687repeat_regionforward44344964434606Upstream
ABE-0013782cpdBCDScomplement44346224436565Upstream
ABE-0013786cysQCDSforward44367554437495Matches
ABE-0013790ytfICDSforward44377074438645Downstream
ABE-0013792ytfJCDScomplement44387084439262Downstream
ABE-0013797ytfKCDSforward44395874439793Downstream
ABE-0013799paeACDScomplement44398724441215Downstream
ABE-0285688repeat_regionforward44413934441490Downstream
ABE-0013804msrACDScomplement44415384442176Downstream
ABE-0013809tamACDSforward44423824444115Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.