Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013804 (msrA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013804 showshow history
Names
msrA pms JW4178 ECK4215 pmsR b4219
Product
methionine sulfoxide reductase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4441538 4442176 639 213
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001636
EnteroFam0013804: Trusted threshold=571.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002569 (IPR002569 Peptide methionine sulphoxide reductase MsrA) Apr 2008
Automated Process Approved IPR036509 (IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily) Jul 2018
Automated Process Approved PF01625 (PF01625 Peptide methionine sulfoxide reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002569, IPR036509
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008113 peptide-methionine (S)-S-oxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name msrA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym pmsR Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW4178 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4215 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pms Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4219 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product methionine sulfoxide reductase A Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name peptide-methionine (S)-S-oxide reductase Published Annotation - Swiss-Prot Accession Number: P0A744
Reference: Escherichia coli K-12 		Mar 2007
Person Approved alternate product name peptide methionine sulfoxide reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013804: Trusted threshold=571.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001636
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002569 Peptide methionine sulphoxide reductase MsrA Protein Sequence Similarity - InterPro Domain: IPR002569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily Protein Sequence Similarity - InterPro Domain: IPR036509
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01625 Peptide methionine sulfoxide reductase Protein Sequence Similarity - PFAM Model Name: PF01625
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.8.4.- Published Annotation - Database Name: EC2GO: GO:0008113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.8.4.11 Published Annotation - Swiss-Prot Accession Number: P0A744
Reference: Escherichia coli K-12 		Mar 2007
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11433 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948734 Published Annotation - Entrez Gene Database ID: 948734
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A744 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A744 Published Annotation - Swiss-Prot Accession Number: P0A744 Jan 2006
Automated Process Approved db xref GI:1790665 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013804 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Proteins - translation and modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note peptide methionine sulfoxide reductase; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77176.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002569, IPR036509
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008113 peptide-methionine (S)-S-oxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001636 msrA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002044 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000734 msrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000880 msrA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001132 msrA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000274 msrA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003257 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000515 msrA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003691 msrA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003983 msrA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001066 msrA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005311 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014816 msrA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003447 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000862 msrA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307320 msrA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000819 msrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001039 msrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006996 msrA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004524 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006735 msrA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004369 msrA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004507 msrA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009908 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006082 msrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007491 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081530 msrA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004904 msrA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005567 msrA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008354 msrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007301 msrA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004851 msrA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009226 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003482 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009061 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007575 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009260 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009196 msrA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010566 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006707 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008379 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006737 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005930 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006073 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005544 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005200 msrA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029400 msrA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005742 msrA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009161 msrA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004852 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003900 msrA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004311 msrA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004951 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004935 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004765 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004895 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179061 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004629 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004689 msrA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135314 msrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001239 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004836 msrA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004006 msrA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001246 msrA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004665 msrA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002842 msrA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005311 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063911 msrA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002086 msrA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000927 msrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004035 msrA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008587 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147165 msrA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000407 msrA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008847 msrA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003376 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005052 msrA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009045 msrA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013834 msrA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013080 msrA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007034 msrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009181 msrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007740 msrA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004153 msrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007130 msrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008232 msrA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009117 msrA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006264 msrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004261 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004223 msrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005573 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004467 msrA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006605 msrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008738 msrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004067 msrA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114975 msrA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086188 msrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005301 msrA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103564 msrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004731 msrA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007448 msrA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005526 msrA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000561 msrA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265920 msrA CDS
Person Approved Go view Shigella boydii 227 ADV-0004602 msrA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010280 msrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006592 msrA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005037 msrA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075863 msrA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090477 msrA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004537 msrA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004781 msrA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002648 VC2549 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000762 msrA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000973 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001264 msrA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002106 msrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002577 msrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002417 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235485 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008085 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000095 msrA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008083 msrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003703 msrA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127195 msrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007837 msrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008534 msrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001855 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006798 msrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004090 msrA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030288 msrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006494 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003932 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004296 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007453 msrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007649 msrA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000486 msrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000566 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004474 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001185 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000427 msrA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23529mutantTn5 InsertionRequest the StrainABE-0013804msrAmsrA::Tn5KAN-I-SceI at position 222 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4436538 to 4447176
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013782cpdBCDScomplement44346224436565Downstream
ABE-0013786cysQCDSforward44367554437495Downstream
ABE-0013790ytfICDSforward44377074438645Downstream
ABE-0013792ytfJCDScomplement44387084439262Downstream
ABE-0013797ytfKCDSforward44395874439793Downstream
ABE-0013799paeACDScomplement44398724441215Downstream
ABE-0285688repeat_regionforward44413934441490Downstream
ABE-0013804msrACDScomplement44415384442176Matches
ABE-0013809tamACDSforward44423824444115Upstream
ABE-0013811tamBCDSforward44441124447891Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.