Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013838 (ytfT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013838 showshow history
Names
ytfT JW5753 ECK4225 b4230
Product
membrane component of an ABC superfamily galactofuranose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4452571 4453596 1026 342
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Apr 2008
Automated Process Approved PF02653 (PF02653 Branched-chain amino acid transport system / permease component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ytfT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5753 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4225 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4230 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily galactofuranose transporter Published Annotation - EcoCyc Accession Number: EG12520
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name putative transport system permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative sugar transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted sugar transporter subunit: membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF02653 Branched-chain amino acid transport system / permease component Protein Sequence Similarity - PFAM Model Name: PF02653
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of ytfT have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG12520), adding 1 codon to the N-terminus. Published Annotation in EcoGene - EG Number: EG12520
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Automated Process Approved db xref ASAP:ABE-0013838 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12520 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39328 Published Annotation - Swiss-Prot Accession Number: P39328 Jan 2005
Automated Process Approved db xref GI:145693214 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948743 Published Annotation - Entrez Gene Database ID: 948743
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39328 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport system permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77187.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002526 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002562 ytfT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002423 ytfT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004043 ytfT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002708 ytfT CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000522 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003976 ytfT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001075 ytfT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005525 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019352 ytfT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003265 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000872 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001030 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006987 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004531 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006725 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004376 ytfT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004498 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009898 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006072 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007500 ytfT CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081540 ytfT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004913 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005577 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008344 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007312 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004858 ytfT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009236 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003494 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009073 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007587 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009273 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009183 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010579 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006695 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008391 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006749 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005942 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006083 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005555 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005210 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029410 ytfT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005734 ytfT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009171 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004862 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004321 ytfT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004962 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004943 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004773 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004905 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179069 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004639 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004699 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135324 ytfT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001249 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004843 ytfT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001889 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004674 ytfT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002850 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005504 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001168 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003932 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001157 ytfT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002965 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001854 ytfT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002372 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009500 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002582 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005008 ytfT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064565 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002486 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003200 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003476 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009328 CDS
Person Approved Go view Shigella boydii 227 ADV-0004593 ytfT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010271 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006579 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004792 ytfT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075854 ytfT CDS
Person Approved Go view Shigella flexneri 301 ABT-0090470 ytfT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004530 ytfT CDS
Person Approved Go view Shigella sonnei 046 ADD-0004788 ytfT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003164 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000452 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003563 ytfT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003592 ytfT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003483 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241794 araH10 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004582 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000151 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007704 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003479 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128442 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005968 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006418 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002124 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009121 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007181 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029930 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006865 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000083 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004220 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008362 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004080 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000143 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000160 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004828 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001220 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000419 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4447571 to 4458596
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013811tamBCDSforward44441124447891Upstream
ABE-0013814ytfPCDSforward44478944448235Upstream
ABE-0013820chpSCDSforward44484474448698Upstream
ABE-0013822chpBCDSforward44486924449042Upstream
ABE-0013824ppaCDScomplement44491224449652Upstream
ABE-0013829ytfQCDSforward44499624450918Upstream
ABE-0285689repeat_regionforward44509444451028Upstream
ABE-0174118ytfRCDSforward44510584452560Upstream
ABE-0013838ytfTCDSforward44525714453596Matches
ABE-0013840yjfFCDSforward44535834454578Overlaps Downstream
ABE-0013842fbpCDScomplement44546114455609Downstream
ABE-0013847mplCDSforward44557854457158Downstream
ABE-0285690repeat_regionforward44571854457268Downstream
ABE-0013850yjgACDScomplement44573144457865Downstream
ABE-0013854tldECDSforward44579594459311Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.