Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013842 (fbp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013842 showshow history
Names
fbp JW4191 ECK4227 fdp b4232
Product
fructose-1,6-bisphosphatase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4454611 4455609 999 333
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001641
EnteroFam0013842: Trusted threshold=969.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000146 (IPR000146 Fructose-1,6-bisphosphatase class 1) Apr 2008
Automated Process Approved IPR033391 (IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal) Jul 2018
Automated Process Approved PF00316 (PF00316 Fructose-1-6-bisphosphatase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000146
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0042578 phosphoric ester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fbp Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym fdp Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW4191 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4227 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4232 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fructose-1,6-bisphosphatase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name fructose-1,6-bisphosphatase Published Annotation - Swiss-Prot Accession Number: P09200 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013842: Trusted threshold=969.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001641
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00316
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal Protein Sequence Similarity - InterPro Domain: IPR033391
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000146 Fructose-1,6-bisphosphatase class 1 Protein Sequence Similarity - InterPro Domain: IPR000146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.1.3.41 Published Annotation - Database Name: EC2GO: GO:0016791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated EC number 3.1.3.- Published Annotation - Database Name: EC2GO: GO:0016791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.3.11 Published Annotation - Swiss-Prot Accession Number: P0A993 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A993 Published Annotation - Swiss-Prot Accession Number: P0A993 Jan 2006
Automated Process Approved db xref GI:1790679 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948753 Published Annotation - Entrez Gene Database ID: 948753
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A993 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10283 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013842 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Gluconeogenesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77189.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000146
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0042578 phosphoric ester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001641 fbp CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001633 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000589 fbp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000668 fbp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001088 fbp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000377 fbp CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002994 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003647 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000525 fbp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003683 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003973 fbp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001078 fbp CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004970 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015201 fbp CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003731 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000876 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297467 fbp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003347 fbp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003038 fbp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001027 fbp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006985 fbp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004533 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006723 fbp CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004378 fbp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004496 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009895 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006070 fbp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007502 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081542 fbp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004915 fbp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005579 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008342 fbp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007314 fbp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004860 fbp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009238 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003496 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009075 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007589 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009275 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009181 fbp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010581 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006693 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008393 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006751 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005944 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006085 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005557 fbp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005212 fbp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029412 fbp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005732 fbp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009173 fbp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004865 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003910 fbp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004323 fbp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004964 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004945 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004775 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004907 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179071 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004641 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004701 fbp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135326 fbp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001251 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004845 fbp CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004012 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001251 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004676 fbp CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002854 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004983 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002647 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003095 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002789 fbp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001208 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003604 fbp CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000552 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011254 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000289 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290268 fbp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006519 fbp CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064243 fbp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002318 fbp CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001015 fbp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003822 fbp CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008933 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147151 fbp CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005246 fbp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008855 fbp CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003367 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005059 fbp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009053 fbp CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013857 fbp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013102 fbp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007026 fbp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009189 fbp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007732 fbp CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004161 fbp CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007138 fbp CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008240 fbp CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009125 fbp CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006256 fbp CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004268 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004230 fbp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005581 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004475 fbp CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006597 fbp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008746 fbp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004075 fbp CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114988 fbp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086195 fbp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005309 fbp CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103581 fbp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004723 fbp CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007440 fbp CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005534 fbp CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000555 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267634 fbp CDS
Person Approved Go view Shigella boydii 227 ADV-0004591 fbp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010269 fbp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006577 fbp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004794 fbp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075850 fbp CDS
Person Approved Go view Shigella flexneri 301 ABT-0090467 fbp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004526 fbp CDS
Person Approved Go view Shigella sonnei 046 ADD-0004790 fbp CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002643 VC2544 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000661 fbp CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000774 fbp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000979 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001281 fbp CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002112 fbp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002572 fbp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001833 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235492 fbp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008090 fbp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000088 fbp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008078 fbp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003698 fbp CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127185 fbp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007842 fbp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008539 fbp CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002415 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006803 fbp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004095 fbp CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030294 fbp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006499 fbp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003925 fbp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004289 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007458 fbp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007644 fbp CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000491 fbp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000573 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004467 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001232 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000416 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22948mutantTn5 InsertionRequest the StrainABE-0013842fbpfbp::Tn5(KAN-I-SceI) at position 477 in Plus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4449611 to 4460609
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013824ppaCDScomplement44491224449652Downstream
ABE-0013829ytfQCDSforward44499624450918Downstream
ABE-0285689repeat_regionforward44509444451028Downstream
ABE-0174118ytfRCDSforward44510584452560Downstream
ABE-0013838ytfTCDSforward44525714453596Downstream
ABE-0013840yjfFCDSforward44535834454578Downstream
ABE-0013842fbpCDScomplement44546114455609Matches
ABE-0013847mplCDSforward44557854457158Upstream
ABE-0285690repeat_regionforward44571854457268Upstream
ABE-0013850yjgACDScomplement44573144457865Upstream
ABE-0013854tldECDSforward44579594459311Upstream
ABE-0013858cybCpseudogeneforward44594884459855Upstream
ABE-0013860nrdGCDScomplement44599004460364Upstream
ABE-0285691repeat_regionforward44604154460498Upstream
ABE-0013865nrdDCDScomplement44605224462660Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.