Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013847 (mpl) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013847 showshow history
Names
mpl tpl JW4192 ECK4228 yjfG b4233
Product
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4455785 4457158 1374 458
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001642
EnteroFam0013847: Trusted threshold=1322.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Apr 2008
Automated Process Approved IPR012237 (IPR012237 (DEPRECATED) Mur ligase) Apr 2008
Automated Process Approved IPR005757 (IPR005757 Murein peptide ligase) Apr 2008
Automated Process Approved IPR000713 (IPR000713 Mur ligase, N-terminal catalytic domain) Apr 2008
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Apr 2008
Automated Process Approved IPR036615 (IPR036615 Mur ligase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036565 (IPR036565 Mur-like, catalytic domain superfamily) Jul 2018
Automated Process Approved PF08245 (PF08245 Mur ligase middle domain) Jul 2018
Automated Process Approved PF02875 (PF02875 Mur ligase family, glutamate ligase domain) Jul 2018
Automated Process Approved PF01225 (PF01225 Mur ligase family, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0007047 (DEPRECATED) cellular cell wall organization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071555 cell wall organization GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016881 acid-amino acid ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016879 ligase activity, forming carbon-nitrogen bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mpl Experimental - PubMed ID: 8808921
Reference: Escherichia coli 		Aug 2002
Automated Process Approved synonym tpl Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4228 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjfG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4192 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4233 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Experimental - PubMed ID: 8808921
Reference: Escherichia coli 		Jan 2006
Automated Process Approved alternate product name UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0013847: Trusted threshold=1322.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001642
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036565 Mur-like, catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036565
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08245 Mur ligase middle domain Protein Sequence Similarity - PFAM Model Name: PF08245
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02875 Mur ligase family, glutamate ligase domain Protein Sequence Similarity - PFAM Model Name: PF02875
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012237 (DEPRECATED) Mur ligase Protein Sequence Similarity - InterPro Domain: IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01225 Mur ligase family, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF01225
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036615 Mur ligase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036615
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005757 Murein peptide ligase Protein Sequence Similarity - InterPro Domain: IPR005757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000713 Mur ligase, N-terminal catalytic domain Protein Sequence Similarity - InterPro Domain: IPR000713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.-.-.- Published Annotation - Database Name: EC2GO: GO:0016874
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.3.2.- Published Annotation - Swiss-Prot Accession Number: P37773 Feb 2006
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790680 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948752 Published Annotation - Entrez Gene Database ID: 948752
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12440 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37773 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37773 Published Annotation - Swiss-Prot Accession Number: P37773 Jan 2005
Automated Process Approved db xref ASAP:ABE-0013847 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77190.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0071555 cell wall organization GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0007047 (DEPRECATED) cellular cell wall organization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016881 acid-amino acid ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016879 ligase activity, forming carbon-nitrogen bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001642 mpl CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001632 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000837 mpl CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000869 mpl CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001087 mpl CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000868 mpl CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002993 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003646 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000526 mpl CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003682 mpl CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003972 mpl CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001079 mpl CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004968 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015202 mpl CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003732 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000877 mpl CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0297470 mpl CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003346 mpl CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003037 mpl CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001025 mpl CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006983 mpl CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004534 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006721 mpl CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004379 mpl CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004495 mpl CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009894 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006068 mpl CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007504 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081544 mpl CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004916 mpl CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005580 mpl CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008340 mpl CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007316 mpl CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004861 mpl CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009240 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009076 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007590 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009276 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009179 mpl CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010582 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006691 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008394 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006753 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005946 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006087 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005559 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005214 mpl CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029413 mpl CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005730 mpl CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009174 mpl CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004866 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003911 mpl CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004324 mpl CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004965 mpl CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004946 mpl CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004776 mpl CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004909 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004642 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004703 mpl CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135327 mpl CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001253 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004846 yjfG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004013 mpl CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001252 mpl CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004677 mpl CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002855 mpl CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004981 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002646 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0003096 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0002788 mpl CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0001209 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0003603 mpl CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000553 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0011253 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000288 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291548 mpl pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006518 mpl CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064244 mpl CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003267 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004239 mpl CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003823 mpl CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008934 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147147 mpl CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000742 mpl CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008856 mpl CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003365 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005060 mpl CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009055 mpl CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013860 mpl CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013105 mpl CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007025 mpl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009190 mpl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007731 mpl CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004162 mpl CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007140 mpl CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008242 mpl CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009126 mpl CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006255 mpl CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005583 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004476 mpl CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006595 mpl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008748 mpl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004076 mpl CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114991 mpl CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086196 mpl CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005311 mpl CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103585 mpl CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004722 mpl CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007439 mpl CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005536 mpl CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000554 mpl CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267447 mpl CDS
Person Approved Go view Shigella boydii 227 ADV-0004590 yjfG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010268 mpl CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006575 mpl CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004795 yjfG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075849 mpl CDS
Person Approved Go view Shigella flexneri 301 ABT-0090466 yjfG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004525 yjfG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004791 mpl CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002641 VC2542 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000777 mpl CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000980 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001284 mpl CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002113 mpl CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002571 mpl CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001834 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235495 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008091 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000086 mpl CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008077 mpl CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003697 mpl CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127183 mpl CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007843 mpl CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008540 mpl CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002416 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006804 mpl CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004096 mpl CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030295 mpl CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006500 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003923 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004287 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007459 mpl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007643 mpl CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000492 mpl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000574 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004465 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001238 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000415 mpl CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4450785 to 4462158
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013829ytfQCDSforward44499624450918Upstream
ABE-0285689repeat_regionforward44509444451028Upstream
ABE-0174118ytfRCDSforward44510584452560Upstream
ABE-0013838ytfTCDSforward44525714453596Upstream
ABE-0013840yjfFCDSforward44535834454578Upstream
ABE-0013842fbpCDScomplement44546114455609Upstream
ABE-0013847mplCDSforward44557854457158Matches
ABE-0285690repeat_regionforward44571854457268Downstream
ABE-0013850yjgACDScomplement44573144457865Downstream
ABE-0013854tldECDSforward44579594459311Downstream
ABE-0013858cybCpseudogeneforward44594884459855Downstream
ABE-0013860nrdGCDScomplement44599004460364Downstream
ABE-0285691repeat_regionforward44604154460498Downstream
ABE-0013865nrdDCDScomplement44605224462660Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.