Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013860 (nrdG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013860 showshow history
Names
nrdG yjgE JW4196 ECK4232 b4237
Product
anaerobic ribonucleotide reductase activating protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4459900 4460364 465 155
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001645
EnteroFam0013860: Trusted threshold=385.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR012837 (IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic) Apr 2008
Automated Process Approved IPR001989 (IPR001989 Radical-activating enzyme, conserved site) Apr 2008
Automated Process Approved PF13353 (PF13353 4Fe-4S single cluster domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012837
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006464 cellular protein modification process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0043365 [formate-C-acetyltransferase]-activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nrdG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Automated Process Approved synonym yjgE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW4196 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4232 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4237 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product anaerobic ribonucleotide reductase activating protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name anaerobic ribonucleotide reductase activating protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013860: Trusted threshold=385.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001645
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR001989 Radical-activating enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR001989
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic Protein Sequence Similarity - InterPro Domain: IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF13353 4Fe-4S single cluster domain Protein Sequence Similarity - PFAM Model Name: PF13353
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Automated Process Uncurated EC number 1.97.1.4 Published Annotation - Database Name: EC2GO: GO:0043365
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 1.97.1.- Published Annotation - Swiss-Prot Accession Number: P0A9N8 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.3.3 (regulation; type of regulation; posttranscriptional; inhibition / activation of enzymes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.3 (information transfer; protein related; posttranslational modification) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12523 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0013860 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0A9N8 Published Annotation - Swiss-Prot Accession Number: P0A9N8 Jan 2006
Automated Process Approved db xref GeneID:948757 Published Annotation - Entrez Gene Database ID: 948757
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1790685 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9N8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Nucleotide interconversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO_process: GO:0006464 - protein modification process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC77194.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012837
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006464 cellular protein modification process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0043365 [formate-C-acetyltransferase]-activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001645 nrdG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001255 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001186 nrdG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001447 nrdG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001650 nrdG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000769 nrdG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002028 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004061 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003836 nrdG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000116 nrdG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003956 nrdG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001094 nrdG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008875 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016554 nrdG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000374 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305762 nrdG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000445 nrdG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000393 nrdG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001020 nrdG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006979 nrdG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004538 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006717 nrdG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004383 nrdG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004491 nrdG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009889 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006064 nrdG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007508 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081549 nrdG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004921 nrdG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005584 nrdG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008335 nrdG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007320 nrdG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004865 nrdG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009244 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003502 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009080 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007594 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009280 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009175 nrdG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010586 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006687 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008398 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006757 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005950 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006091 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005563 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005218 nrdG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029417 nrdG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005726 nrdG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009178 nrdG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003915 nrdG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004328 nrdG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004969 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004950 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004780 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004914 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179077 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004646 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004709 nrdG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135331 nrdG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001257 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004850 nrdG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004070 nrdG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001313 nrdG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004695 nrdG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002869 nrdG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008624 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003556 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002175 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003717 nrdG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004443 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000498 nrdG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003789 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008290 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289125 nrdG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007456 nrdG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060592 nrdG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000261 nrdG CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000129 nrdG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001951 nrdG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004877 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147023 nrdG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008893 nrdG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003356 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005078 nrdG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009070 nrdG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013901 nrdG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013146 nrdG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006988 nrdG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009206 nrdG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007715 nrdG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004178 nrdG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007155 nrdG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008257 nrdG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009142 nrdG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006239 nrdG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004284 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004246 nrdG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005626 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004512 nrdG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006558 nrdG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008764 nrdG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004092 nrdG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115011 nrdG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086211 nrdG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005349 nrdG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103677 nrdG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004686 nrdG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007401 nrdG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005573 nrdG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000488 nrdG CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266438 nrdG CDS
Person Approved Go view Shigella boydii 227 ADV-0004586 nrdG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010264 nrdG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006571 nrdG CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004800 nrdG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075843 nrdG CDS
Person Approved Go view Shigella flexneri 301 ABT-0090462 nrdG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004521 nrdG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004795 nrdG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003401 VCA0512 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000866 nrdG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003278 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001497 nrdG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002176 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001597 nrdG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001889 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235615 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008160 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003541 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008412 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003905 nrdG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126981 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006340 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005827 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005816 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004168 nrdG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030365 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006570 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000781 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003908 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004993 nrdG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007576 nrdG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000556 nrdG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000648 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004381 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001282 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000401 nrdG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21742mutantTn5 InsertionRequest the StrainABE-0013860nrdGnrdG::Tn5KAN-I-SceI at position 418 in Minus orientation ,+ pKD460Blattner Laboratory
FB21743mutantTn5 InsertionRequest the StrainABE-0013860nrdGnrdG::Tn5KAN-I-SceI at position 418 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4454900 to 4465364
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013842fbpCDScomplement44546114455609Downstream
ABE-0013847mplCDSforward44557854457158Downstream
ABE-0285690repeat_regionforward44571854457268Downstream
ABE-0013850yjgACDScomplement44573144457865Downstream
ABE-0013854tldECDSforward44579594459311Downstream
ABE-0013858cybCpseudogeneforward44594884459855Downstream
ABE-0013860nrdGCDScomplement44599004460364Matches
ABE-0285691repeat_regionforward44604154460498Upstream
ABE-0013865nrdDCDScomplement44605224462660Upstream
ABE-0013870treCCDScomplement44630544464709Upstream
ABE-0013872treBCDScomplement44647594466180Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.