Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013870 (treC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013870 showshow history
Names
treC treE olgH JW4198 ECK4234 b4239
Product
trehalose-6-P hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4463054 4464709 1656 552
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR012769 (IPR012769 Trehalose-6-phosphate hydrolase) Apr 2008
Automated Process Approved IPR006589 (IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain) Apr 2008
Automated Process Approved IPR013780 (IPR013780 Glycosyl hydrolase, all-beta) Apr 2008
Automated Process Approved IPR006047 (IPR006047 Glycosyl hydrolase, family 13, catalytic domain) Apr 2008
Automated Process Approved IPR022567 (IPR022567 Glycosyl hydrolase, C-terminal (DUF3459)) Jul 2018
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF11941 (PF11941 Domain of unknown function (DUF3459)) Jul 2018
Automated Process Approved PF00128 (PF00128 Alpha amylase, catalytic domain) Jul 2018
Automated Process Uncurated GH13 (GH13 Glycoside Hydrolase Family 13) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005993 trehalose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008788 alpha,alpha-phosphotrehalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name treC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4198 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym olgH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym treE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4234 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4239 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product trehalose-6-P hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name trehalase 6-P hydrolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name trehalose-6-P hydrolase, alternative inducer of maltose system, cytoplasmic Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00128 Alpha amylase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00128
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012769 Trehalose-6-phosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF11941 Domain of unknown function (DUF3459) Protein Sequence Similarity - PFAM Model Name: PF11941
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006589
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH13 Glycoside Hydrolase Family 13 Protein Sequence Similarity - CAZy Model Name: GH13
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006047 Glycosyl hydrolase, family 13, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006047
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) Protein Sequence Similarity - InterPro Domain: IPR022567
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013780 Glycosyl hydrolase, all-beta Protein Sequence Similarity - InterPro Domain: IPR013780
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.2.1.93 Published Annotation - Swiss-Prot Accession Number: P28904 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P28904 Published Annotation - Swiss-Prot Accession Number: P28904 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P28904 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948762 Published Annotation - Entrez Gene Database ID: 948762
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790687 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013870 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11402 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note trehalase 6-P hydrolase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77196.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005993 trehalose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008788 alpha,alpha-phosphotrehalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002809 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001916 treC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001813 treC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001169 treC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001038 treC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003830 treC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000120 treC CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003953 treA_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001103 treA_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000897 treC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301787 palI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001714 palI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001018 treC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006976 treC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004540 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006714 treC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004385 treC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004488 treC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009887 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006062 treC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007511 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081551 treC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004923 treC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005586 treC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008331 treC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007323 treC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004867 treC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009248 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003504 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009084 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007597 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009284 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009171 treC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010591 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006684 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008403 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006760 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005954 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006094 treC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005567 treC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005223 treC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029419 treC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005723 treC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009181 treC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004875 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003917 treC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004330 treC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004971 treC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004952 treC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004782 treC CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004916 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179079 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004648 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004712 treC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135333 treC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001259 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004852 treC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004073 treC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000123 treC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004701 treC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002871 treC CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063299 treC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001742 treC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003951 treC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000256 treC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007793 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144361 treC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008896 treC CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005082 treC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009073 treC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013908 treC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006985 treC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009209 treC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007712 treC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004181 treC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007158 treC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008260 treC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009145 treC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006236 treC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004287 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004249 treC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005630 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004515 treC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006555 treC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008767 treC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004095 treC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115018 treC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086214 treC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005352 treC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103683 treC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004683 treC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007398 treC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005576 treC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000484 treC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265794 CDS
Person Approved Go view Shigella boydii 227 ADV-0004584 treC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010261 treC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006569 treC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004802 treC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075840 treC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090460 treC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004519 treC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004797 treC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000975 VC0911 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008211 treC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000887 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010837 olgH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002751 treA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001399 treA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003724 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243534 treC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005272 treC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004425 treC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005750 treC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003770 treC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127700 treC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007768 treC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008679 treC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003436 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006727 treC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008055 treC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029756 treC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006421 treC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004178 treC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000353 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006670 treC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004369 treC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003649 treC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004438 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000574 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001319 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000393 treC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23530mutantTn5 InsertionRequest the StrainABE-0013870treCtreC::Tn5KAN-I-SceI at position 1419 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4458054 to 4469709
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013854tldECDSforward44579594459311Downstream
ABE-0013858cybCpseudogeneforward44594884459855Downstream
ABE-0013860nrdGCDScomplement44599004460364Downstream
ABE-0285691repeat_regionforward44604154460498Downstream
ABE-0013865nrdDCDScomplement44605224462660Downstream
ABE-0013870treCCDScomplement44630544464709Matches
ABE-0013872treBCDScomplement44647594466180Upstream
ABE-0013875treRCDScomplement44662994467246Upstream
ABE-0285267mgtLCDSforward44674314467484Upstream
ABE-0013883mgtACDSforward44676254470321Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.