Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013872 (treB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013872 showshow history
Names
treB JW4199 ECK4235 b4240
Product
PTS system trehalose-specific EIIBC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4464759 4466180 1422 474
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001996 (IPR001996 Phosphotransferase system, IIB component, type 1) Apr 2008
Automated Process Approved IPR004719 (IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component) Apr 2008
Automated Process Approved IPR011296 (IPR011296 Phosphotransferase system, trehalose-specific IIBC component) Apr 2008
Automated Process Approved IPR011535 (IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component) Apr 2008
Automated Process Approved IPR013013 (IPR013013 Phosphotransferase system, EIIC component, type 1) Apr 2008
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Apr 2008
Automated Process Approved IPR018113 (IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site) Jul 2018
Automated Process Approved IPR036878 (IPR036878 Glucose permease domain IIB) Jul 2018
Automated Process Approved PF00367 (PF00367 phosphotransferase system, EIIB) Jul 2018
Automated Process Approved PF02378 (PF02378 Phosphotransferase system, EIIC) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015771 trehalose transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018113, IPR003352, IPR001996, IPR004719, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015574 trehalose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name treB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4199 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4235 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4240 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system trehalose-specific EIIBC component Experimental - PubMed ID: 7608078
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name PTS family enzyme IIBC, trehalose(maltose)-specific Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name PTS system enzyme II, trehalose specific Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR011296 Phosphotransferase system, trehalose-specific IIBC component Protein Sequence Similarity - InterPro Domain: IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036878 Glucose permease domain IIB Protein Sequence Similarity - InterPro Domain: IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00367 phosphotransferase system, EIIB Protein Sequence Similarity - PFAM Model Name: PF00367
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02378 Phosphotransferase system, EIIC Protein Sequence Similarity - PFAM Model Name: PF02378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR018113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013013 Phosphotransferase system, EIIC component, type 1 Protein Sequence Similarity - InterPro Domain: IPR013013
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001996 Phosphotransferase system, IIB component, type 1 Protein Sequence Similarity - InterPro Domain: IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Protein Sequence Similarity - InterPro Domain: IPR004719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component Protein Sequence Similarity - InterPro Domain: IPR011535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P36672 Feb 2006
Person Uncurated MultiFun 4.4.A.1 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Glucose-Glucoside (Glc) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.181 (transport; substrate; trehalose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.9 (metabolism; central intermediary metabolism; glucose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P36672 Published Annotation - Swiss-Prot Accession Number: P36672 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P36672 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948761 Published Annotation - Entrez Gene Database ID: 948761
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12127 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013872 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system enzyme II, trehalose specific; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006006 - glucose metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77197.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015771 trehalose transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018113, IPR003352, IPR001996, IPR004719, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015574 trehalose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003100 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000100 treB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002220 treB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001591 treB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000118 treB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003829 treB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000121 treB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003952 treB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001104 treB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000898 treB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001017 treB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006975 treB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004541 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006713 treP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004386 treB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004487 treB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009886 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006061 treB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007512 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081552 treB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004924 treB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005587 treP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008330 treB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007324 treB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004868 treB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009249 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003505 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009085 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007598 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009285 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009170 treB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010592 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006683 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008404 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006761 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005955 treB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006095 treB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005568 treB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005224 treB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029420 treB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005722 treB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009182 treB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003918 treB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004331 treB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004972 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004953 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004783 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004917 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179080 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004649 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004713 treB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135334 treB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001260 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004853 treB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004074 treB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000122 treB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004702 treB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002872 treB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063298 treB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001688 treB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001940 treB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000255 treB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007792 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144363 treB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008897 treB CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005083 pttB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009074 treB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013910 treB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013155 treB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006984 treB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009210 treB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007711 treB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004182 treP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007159 treP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008261 treP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009146 treB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006235 treB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004288 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004250 treB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005631 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004516 treB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006554 treP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008768 treB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004096 treB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115020 treB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086215 treB CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103685 treB pseudogene
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004682 treB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007397 treB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000483 treB CDS
Person Approved Go view Shigella boydii 227 ADV-0004583 treB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010260 treB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006568 treB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004803 treB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075839 treB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090459 treB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004810 CDS
Person Approved Go view Shigella sonnei 046 ADD-0004798 treB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000974 VC0910 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008213 treB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000888 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010839 treB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002752 treB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001400 treB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003723 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243523 treB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005271 treB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004426 treB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005751 treB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003769 treB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127702 treB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007769 treB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008678 treB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003435 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006728 treB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008056 treB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029755 treB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006422 treB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004177 treB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000354 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006671 treB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004370 treB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003648 treB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004437 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000575 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001326 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000392 treB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21744mutantTn5 InsertionRequest the StrainABE-0013872treBtreB::Tn5KAN-I-SceI at position 967 in Plus orientation ,+ pKD460Blattner Laboratory
FB21745mutantTn5 InsertionRequest the StrainABE-0013872treBtreB::Tn5KAN-I-SceI at position 967 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4459759 to 4471180
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013858cybCpseudogeneforward44594884459855Downstream
ABE-0013860nrdGCDScomplement44599004460364Downstream
ABE-0285691repeat_regionforward44604154460498Downstream
ABE-0013865nrdDCDScomplement44605224462660Downstream
ABE-0013870treCCDScomplement44630544464709Downstream
ABE-0013872treBCDScomplement44647594466180Matches
ABE-0013875treRCDScomplement44662994467246Upstream
ABE-0285267mgtLCDSforward44674314467484Upstream
ABE-0013883mgtACDSforward44676254470321Upstream
ABE-0285692repeat_regionforward44703814470468Upstream
ABE-0013886ridACDScomplement44705274470913Upstream
ABE-0013889pyrICDScomplement44709864471447Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.