Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013889 (pyrI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013889 showshow history
Names
pyrI JW4203 ECK4239 b4244
Product
aspartate carbamoyltransferase regulatory subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4470986 4471447 462 154
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001648
EnteroFam0013889: Trusted threshold=410.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002801 (IPR002801 Aspartate transcarbamylase regulatory subunit) Apr 2008
Automated Process Approved IPR020542 (IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal) Jul 2018
Automated Process Approved IPR020545 (IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal) Jul 2018
Automated Process Approved IPR036793 (IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036792 (IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF02748 (PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain) Jul 2018
Automated Process Approved PF01948 (PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002801
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009347 aspartate carbamoyltransferase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002801
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrI Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4239 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4203 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4244 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product aspartate carbamoyltransferase regulatory subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Protein Family
Person Approved EnteroFam EnteroFam0013889: Trusted threshold=410.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001648
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR020542
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002801 Aspartate transcarbamylase regulatory subunit Protein Sequence Similarity - InterPro Domain: IPR002801
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036793
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR020545
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Protein Sequence Similarity - PFAM Model Name: PF02748
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036792
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Protein Sequence Similarity - PFAM Model Name: PF01948
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.3.3 (regulation; type of regulation; posttranscriptional; inhibition / activation of enzymes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.2 (metabolism; building block biosynthesis; nucleotide; pyrimidine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790692 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7F3 Published Annotation - Swiss-Prot Accession Number: P0A7F3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7F3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013889 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10811 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948763 Published Annotation - Entrez Gene Database ID: 948763
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Pyrimidine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77201.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002801
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009347 aspartate carbamoyltransferase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002801
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001648 pyrI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001258 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000460 pyrI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000908 pyrI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001170 pyrI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001444 pyrI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002042 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004074 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129640 pyrI CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104481 pyrI CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003824 pyrI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000126 pyrI CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003944 pyrI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001112 pyrI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008858 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016568 pyrI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000387 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000904 pyrI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305744 pyrI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000450 pyrI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000397 pyrI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001012 pyrI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006971 pyrI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004546 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006709 pyrI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004390 pyrI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004483 pyrI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009882 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006056 pyrI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007516 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081557 pyrI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004928 pyrI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005591 pyrI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008326 pyrI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007329 pyrI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004872 pyrI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009254 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003510 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009089 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007602 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009289 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009166 pyrI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010596 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006679 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008408 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006765 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005959 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006099 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005572 pyrI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005228 pyrI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029425 pyrI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005718 pyrI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009188 pyrI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004881 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003922 pyrI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004335 pyrI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004978 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004958 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004788 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004922 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004655 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004717 pyrI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135338 pyrI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001265 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004859 pyrI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000131 pyrI CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000108 pyrI CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004706 pyrI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002879 pyrI CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008614 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003569 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002162 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003731 pyrI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004427 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000514 pyrI CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003774 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008294 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003996 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289142 pyrI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007469 pyrI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060599 pyrI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004237 pyrI CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002412 pyrI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002791 pyrI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004884 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147013 pyrI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008903 pyrI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003346 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005087 pyrI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009080 pyrI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013931 pyrI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013175 pyrI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006979 pyrI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009216 pyrI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007705 pyrI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004188 pyrI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007164 pyrI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008266 pyrI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009151 pyrI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006230 pyrI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004293 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004255 pyrI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005638 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004522 pyrI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006548 pyrI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008774 pyrI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004102 pyrI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115034 pyrI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086220 pyrI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005359 pyrI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103703 pyrI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004676 pyrI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007391 pyrI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005584 pyrI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000476 pyrI CDS
Person Approved Go view Shigella boydii 227 ADV-0004579 pyrI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010256 pyrI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006564 pyrI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004807 pyrI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075834 pyrI CDS
Person Approved Go view Shigella flexneri 301 ABT-0090455 pyrI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004515 pyrI CDS
Person Approved Go view Shigella sonnei 046 ADD-0004802 pyrI CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002054 pyrI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002611 VC2511 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000119 pyrI CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000873 pyrI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002319 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010826 pyrI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002745 pyrI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001396 pyrI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000151 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243518 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005267 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004431 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005755 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003763 pyrI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127375 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007773 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008470 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000675 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006735 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008060 pyrI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029751 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006429 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004172 pyrI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000359 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006675 pyrI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004374 pyrI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003644 pyrI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004432 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000580 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001357 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000387 pyrI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21748mutantTn5 InsertionRequest the StrainABE-0013889pyrIpyrI::Tn5KAN-I-SceI at position 103 in Plus orientation ,- pKD465Blattner Laboratory
FB21749mutantTn5 InsertionRequest the StrainABE-0013889pyrIpyrI::Tn5KAN-I-SceI at position 103 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4465986 to 4476447
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013872treBCDScomplement44647594466180Downstream
ABE-0013875treRCDScomplement44662994467246Downstream
ABE-0285267mgtLCDSforward44674314467484Downstream
ABE-0013883mgtACDSforward44676254470321Downstream
ABE-0285692repeat_regionforward44703814470468Downstream
ABE-0013886ridACDScomplement44705274470913Downstream
ABE-0013889pyrICDScomplement44709864471447Matches
ABE-0013892pyrBCDScomplement44714604472395Upstream
ABE-0013899pyrLCDScomplement44723994472533Upstream
ABE-0013905yjgHCDScomplement44728144473209Upstream
ABE-0013909bdcACDScomplement44733404474053Upstream
ABE-0013918bdcRCDSforward44741244474717Upstream
ABE-0013921tabACDSforward44748624475314Upstream
ABE-0013925yjgLCDSforward44754374477251Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.