Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013892 (pyrB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013892 showshow history
Names
pyrB JW4204 ECK4240 b4245
Product
aspartate carbamoyltransferase catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4471460 4472395 936 312
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001649
EnteroFam0013892: Trusted threshold=892.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006130 (IPR006130 Aspartate/ornithine carbamoyltransferase) Apr 2008
Automated Process Approved IPR002082 (IPR002082 Aspartate carbamoyltransferase) Apr 2008
Automated Process Approved IPR006132 (IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding) Apr 2008
Automated Process Approved IPR006131 (IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain) Apr 2008
Automated Process Approved IPR014695 (IPR014695 (DEPRECATED) Aspartate carbamoyltransferase, bacterial/plant) Apr 2008
Automated Process Approved IPR036901 (IPR036901 Aspartate/ornithine carbamoyltransferase superfamily) Jul 2018
Automated Process Approved PF02729 (PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain) Jul 2018
Automated Process Approved PF00185 (PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004070 aspartate carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4240 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4204 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4245 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product aspartate carbamoyltransferase catalytic subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name aspartate carbamoyltransferase, catalytic subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013892: Trusted threshold=892.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001649
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006130 Aspartate/ornithine carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014695 (DEPRECATED) Aspartate carbamoyltransferase, bacterial/plant Protein Sequence Similarity - InterPro Domain: IPR014695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR036901
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Protein Sequence Similarity - InterPro Domain: IPR006131
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Protein Sequence Similarity - PFAM Model Name: PF02729
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Protein Sequence Similarity - InterPro Domain: IPR006132
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Protein Sequence Similarity - PFAM Model Name: PF00185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002082 Aspartate carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR002082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.1.3.- Published Annotation - Database Name: EC2GO: GO:0016743
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.1.3.2 Published Annotation - Swiss-Prot Accession Number: P0A786 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.4 (metabolism; building block biosynthesis; nucleotide; pyrimidine ribonucleotide biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A786 Published Annotation - Swiss-Prot Accession Number: P0A786 Jan 2006
Automated Process Approved db xref GeneID:948767 Published Annotation - Entrez Gene Database ID: 948767
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:2367364 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A786 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013892 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10805 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Pyrimidine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77202.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004070 aspartate carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001649 pyrB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001259 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000369 pyrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000483 pyrB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000610 pyrB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000830 pyrB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002043 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004075 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129639 pyrB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104480 pyrB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003823 pyrB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000127 pyrB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003943 pyrB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001113 pyrB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008857 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016570 pyrB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000388 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000905 pyrB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305740 pyrB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000451 pyrB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000398 pyrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001011 pyrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006970 pyrB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004547 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006708 pyrB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004391 pyrB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004482 pyrB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009881 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006055 pyrB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007517 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081558 pyrB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004929 pyrB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005592 pyrB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008325 pyrB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007330 pyrB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004873 pyrB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009255 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003511 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009090 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007603 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009290 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009165 pyrB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010597 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006678 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008409 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006766 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005960 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006100 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005573 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005229 pyrB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029426 pyrB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005717 pyrB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009189 pyrB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004883 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003923 pyrB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004336 pyrB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004979 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004959 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004789 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004923 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179086 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004656 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004718 pyrB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135339 pyrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001266 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004860 pyrB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000132 pyrB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000107 pyrB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004707 pyrB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002880 pyrB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008613 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003570 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002161 pyrB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003732 pyrB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004426 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000515 pyrB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003773 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008295 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003997 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289143 pyrB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007470 pyrB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060600 pyrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000268 pyrB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002411 pyrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002792 pyrB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004885 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147002 pyrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008904 pyrB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003345 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005088 pyrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009081 pyrB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013934 pyrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013178 pyrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006978 pyrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009217 pyrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007704 pyrB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004189 pyrB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007165 pyrB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008267 pyrB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009152 pyrB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006229 pyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004294 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004256 pyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004523 pyrB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006547 pyrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008775 pyrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004103 pyrB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115036 pyrB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086221 pyrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005361 pyrB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103706 pyrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004675 pyrB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007390 pyrB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005585 pyrB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000475 pyrB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264867 pyrB CDS
Person Approved Go view Shigella boydii 227 ADV-0004578 pyrB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010255 pyrB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006563 pyrB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004808 pyrB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075833 pyrB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090454 pyrB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004514 pyrB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004803 pyrB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002610 VC2510 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000641 pyrB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000889 pyrB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002318 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010822 pyrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002744 pyrB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001395 pyrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000152 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243517 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005266 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004432 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005756 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003762 pyrB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127372 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007774 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008471 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000676 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006736 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008061 pyrB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029750 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006430 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004171 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000360 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006676 pyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004375 pyrB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003643 pyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004431 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000581 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001361 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000386 pyrB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21750mutantTn5 InsertionRequest the StrainABE-0013892pyrBpyrB::Tn5KAN-I-SceI at position 683 in Plus orientation ,- pKD465Blattner Laboratory
FB21751mutantTn5 InsertionRequest the StrainABE-0013892pyrBpyrB::Tn5KAN-I-SceI at position 683 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4466460 to 4477395
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013875treRCDScomplement44662994467246Downstream
ABE-0285267mgtLCDSforward44674314467484Downstream
ABE-0013883mgtACDSforward44676254470321Downstream
ABE-0285692repeat_regionforward44703814470468Downstream
ABE-0013886ridACDScomplement44705274470913Downstream
ABE-0013889pyrICDScomplement44709864471447Downstream
ABE-0013892pyrBCDScomplement44714604472395Matches
ABE-0013899pyrLCDScomplement44723994472533Upstream
ABE-0013905yjgHCDScomplement44728144473209Upstream
ABE-0013909bdcACDScomplement44733404474053Upstream
ABE-0013918bdcRCDSforward44741244474717Upstream
ABE-0013921tabACDSforward44748624475314Upstream
ABE-0013925yjgLCDSforward44754374477251Upstream
ABE-0013927argICDScomplement44773074478311Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.