Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013927 (argI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013927 showshow history
Names
argI JW4211 ECK4247 b4254
Product
ornithine carbamoyltransferase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4477307 4478311 1005 335
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002292 (IPR002292 Ornithine/putrescine carbamoyltransferase) Apr 2008
Automated Process Approved IPR006130 (IPR006130 Aspartate/ornithine carbamoyltransferase) Apr 2008
Automated Process Approved IPR006132 (IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding) Apr 2008
Automated Process Approved IPR006131 (IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain) Apr 2008
Automated Process Approved IPR036901 (IPR036901 Aspartate/ornithine carbamoyltransferase superfamily) Jul 2018
Automated Process Approved PF02729 (PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain) Jul 2018
Automated Process Approved PF00185 (PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009348 ornithine carbamoyltransferase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004585 ornithine carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4247 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4211 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4254 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ornithine carbamoyltransferase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name ornithine carbamoyltransferase 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR002292 Ornithine/putrescine carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006130 Aspartate/ornithine carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Protein Sequence Similarity - PFAM Model Name: PF02729
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Protein Sequence Similarity - PFAM Model Name: PF00185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR036901
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Protein Sequence Similarity - InterPro Domain: IPR006131
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Protein Sequence Similarity - InterPro Domain: IPR006132
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.1.3.- Published Annotation - Database Name: EC2GO: GO:0016743
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.1.3.3 Published Annotation - Swiss-Prot Accession Number: P04391 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013927 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04391 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P04391 Published Annotation - Swiss-Prot Accession Number: P04391 Jan 2005
Automated Process Approved db xref GeneID:948774 Published Annotation - Entrez Gene Database ID: 948774
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790703 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10069 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77211.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009348 ornithine carbamoyltransferase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004585 ornithine carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001261 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000336 argF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000345 argF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000734 argF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000085 argF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002046 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004077 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003818 argI CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003933 argI CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001121 argI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008854 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016575 argI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000391 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305736 argI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000452 argI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001008 argF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006962 argF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004550 pseudogene
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006699 argF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004398 argI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004476 argI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009874 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006047 argF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007524 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081567 argI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004936 argF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005602 argF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008317 argF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007337 argF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004880 argI CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009262 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003518 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009097 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007610 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009298 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009158 argF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010605 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006671 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008417 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006774 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005968 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006109 argF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005581 argF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005237 argF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029436 argI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005709 argI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009198 argF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003930 argI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004343 argI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004989 argF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004967 argF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004664 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004726 argF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135348 argI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001273 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004869 argI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000135 argI CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004709 argI CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003733 argI CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000516 argI CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289145 argI CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060602 argI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004241 argI CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002409 argI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002797 argI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008914 argF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003334 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005097 argI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009092 argF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013957 argI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013201 argI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006967 argF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009226 argF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007694 argF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004200 argF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007174 argF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008277 argF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009162 argF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006219 argF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004302 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004264 argI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005651 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004534 argF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006536 argF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008785 argF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004113 argF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115050 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086229 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005372 argI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103735 argI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004665 argF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007380 argF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005595 argF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000473 argI CDS
Person Approved Go view Shigella boydii 227 ADV-0004564 argI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010246 argF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006556 argF CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004823 argI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075821 argI CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0090445 argI CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004505 argI CDS
Person Approved Go view Shigella sonnei 046 ADD-0004815 argI CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235636 argI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008168 argF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003529 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008421 argF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003912 argI CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126947 argI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006348 argF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005835 argF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001389 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005824 argF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004176 argF CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030373 argI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006578 argF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000793 argI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003896 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005001 argF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007568 argF CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000564 argI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000659 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004370 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001389 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000377 argI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21752mutantTn5 InsertionRequest the StrainABE-0013927argIargI::Tn5KAN-I-SceI at position 390 in Minus orientation ,- pKD465Blattner Laboratory
FB21753mutantTn5 InsertionRequest the StrainABE-0013927argIargI::Tn5KAN-I-SceI at position 390 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4472307 to 4483311
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013892pyrBCDScomplement44714604472395Downstream
ABE-0013899pyrLCDScomplement44723994472533Downstream
ABE-0013905yjgHCDScomplement44728144473209Downstream
ABE-0013909bdcACDScomplement44733404474053Downstream
ABE-0013918bdcRCDSforward44741244474717Downstream
ABE-0013921tabACDSforward44748624475314Downstream
ABE-0013925yjgLCDSforward44754374477251Downstream
ABE-0013927argICDScomplement44773074478311Matches
ABE-0013936rraBCDSforward44784734478889Upstream
ABE-0285693repeat_regionforward44789394478972Upstream
ABE-0013939yjgMCDScomplement44790344479537Upstream
ABE-0013944yjgNCDSforward44797304480926Upstream
ABE-0285694repeat_regionforward44809394480956Upstream
ABE-0013946valSCDScomplement44809824483837Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.