Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013946 (valS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013946 showshow history
Names
valS JW4215 ECK4251 val-act b4258
Product
valyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4480982 4483837 2856 952
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001652
EnteroFam0013946: Trusted threshold=2850.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009008 (IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR002300 (IPR002300 Aminoacyl-tRNA synthetase, class Ia) Apr 2008
Automated Process Approved IPR002303 (IPR002303 Valine-tRNA ligase) Apr 2008
Automated Process Approved IPR013155 (IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Apr 2008
Automated Process Approved IPR010978 (IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm) Apr 2008
Automated Process Approved IPR019499 (IPR019499 Valyl-tRNA synthetase, tRNA-binding arm) Jul 2018
Automated Process Approved PF08264 (PF08264 Anticodon-binding domain of tRNA ligase) Jul 2018
Automated Process Approved PF00133 (PF00133 tRNA synthetases class I (I, L, M and V)) Jul 2018
Automated Process Approved PF10458 (PF10458 Valyl tRNA synthetase tRNA binding arm) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006438 valyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002300, IPR019499, IPR002303, IPR009080, IPR010978
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004832 valine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name valS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4251 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym val-act Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW4215 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4258 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product valyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name valine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013946: Trusted threshold=2850.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001652
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Protein Sequence Similarity - InterPro Domain: IPR009008
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002300 Aminoacyl-tRNA synthetase, class Ia Protein Sequence Similarity - InterPro Domain: IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF10458 Valyl tRNA synthetase tRNA binding arm Protein Sequence Similarity - PFAM Model Name: PF10458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019499 Valyl-tRNA synthetase, tRNA-binding arm Protein Sequence Similarity - InterPro Domain: IPR019499
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08264 Anticodon-binding domain of tRNA ligase Protein Sequence Similarity - PFAM Model Name: PF08264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00133 tRNA synthetases class I (I, L, M and V) Protein Sequence Similarity - PFAM Model Name: PF00133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Protein Sequence Similarity - InterPro Domain: IPR010978
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR013155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002303 Valine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.9 Published Annotation - Swiss-Prot Accession Number: P07118 Feb 2006
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11067 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790708 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948785 Published Annotation - Entrez Gene Database ID: 948785
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P07118 Published Annotation - Swiss-Prot Accession Number: P07118 Jan 2005
Automated Process Approved db xref ASAP:ABE-0013946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07118 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note valine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77215.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006438 valyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002300, IPR019499, IPR002303, IPR009080, IPR010978
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004832 valine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001652 valS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000159 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000147 valS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000189 valS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000970 valS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000332 valS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002063 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004043 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129636 valS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105057 valS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104477 valS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003812 valS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000144 valS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003927 valS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001126 valS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008842 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016588 valS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000405 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004414 valS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305717 valS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000460 valS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000403 valS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001004 valS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006957 valS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004559 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006694 valS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004402 valS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004472 valS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009870 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006043 valS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007528 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081572 valS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004940 valS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005606 valS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008313 valS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007341 valS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004884 valS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009266 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003522 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009101 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007614 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009302 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009154 valS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010609 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006667 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008421 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006778 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005972 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006113 valS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005585 valS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005241 valS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029440 valS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005705 valS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009202 valS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004890 valS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003934 valS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004347 valS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004993 valS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004974 valS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004802 valS CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004937 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004668 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004730 valS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135352 valS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001277 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004873 valS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000102 valS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000145 valS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004713 valS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001928 valS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008600 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003580 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002154 valS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003738 valS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004419 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000521 valS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003767 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008300 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004009 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289149 valS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007477 valS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060620 valS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000265 valS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002810 valS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004906 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146974 valS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001297 valS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008921 valS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003322 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005105 valS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009099 valS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013973 valS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013216 valS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006961 valS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009234 valS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007686 valS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004207 valS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007181 valS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008285 valS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009169 valS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006212 valS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004309 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004271 valS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005658 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004541 valS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006529 valS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008792 valS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004120 valS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115061 valS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086236 valS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005379 valS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103753 valS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004658 valS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007373 valS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005602 valS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000467 valS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267052 valS CDS
Person Approved Go view Shigella boydii 227 ADV-0004556 valS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010240 valS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006552 valS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004831 valS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075817 valS CDS
Person Approved Go view Shigella flexneri 301 ABT-0090441 valS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004501 valS CDS
Person Approved Go view Shigella sonnei 046 ADD-0004825 valS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002603 VC2503 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000640 valS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007651 valS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002752 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001538 valS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002189 valS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001583 valS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002822 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235642 valS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008171 valS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003525 valS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008426 valS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003915 valS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126940 valS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006351 valS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005839 valS CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005828 valS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004179 valS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030376 valS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006582 valS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000796 valS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003893 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005004 valS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007564 valS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000567 valS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000662 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004367 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001409 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000371 valS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4475982 to 4488837
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013925yjgLCDSforward44754374477251Downstream
ABE-0013927argICDScomplement44773074478311Downstream
ABE-0013936rraBCDSforward44784734478889Downstream
ABE-0285693repeat_regionforward44789394478972Downstream
ABE-0013939yjgMCDScomplement44790344479537Downstream
ABE-0013944yjgNCDSforward44797304480926Downstream
ABE-0285694repeat_regionforward44809394480956Downstream
ABE-0013946valSCDScomplement44809824483837Matches
ABE-0013948holCCDScomplement44838374484280Overlaps Upstream
ABE-0285695repeat_regionforward44843334484416Upstream
ABE-0013953pepACDScomplement44844404485951Upstream
ABE-0285851ytgBCDSforward44860434486099Upstream
ABE-0285825ytgACDSforward44861054486155Upstream
ABE-0013958lptFCDSforward44862184487318Upstream
ABE-0013960lptGCDSforward44873184488400Upstream
ABE-0285696repeat_regionforward44885054488540Upstream
ABE-0013963yjgRCDScomplement44885614490063Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.