Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013953 (pepA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013953 showshow history
Names
pepA JW4217 ECK4253 xerB carP b4260
Product
aminopeptidase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4484440 4485951 1512 504
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001654
EnteroFam0013953: Trusted threshold=1523; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000819 (IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal) Apr 2008
Automated Process Approved IPR008283 (IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal) Apr 2008
Automated Process Approved IPR011356 (IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B) Apr 2008
Automated Process Approved PF00883 (PF00883 Cytosol aminopeptidase family, catalytic domain) Jul 2018
Automated Process Approved PF02789 (PF02789 Cytosol aminopeptidase family, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006310 DNA recombination Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008235 metalloexopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004178 (OBSOLETE) leucyl aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004177 aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pepA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym carP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym xerB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK4253 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4217 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4260 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product aminopeptidase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Person Uncurated alternate product name aminopeptidase A, a cyteinylglycinase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name aminopeptidase A/I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site-specific recombination factor Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0013953: Trusted threshold=1523; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001654
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00883 Cytosol aminopeptidase family, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00883
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02789 Cytosol aminopeptidase family, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02789
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B Protein Sequence Similarity - InterPro Domain: IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008283
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.4.11.- Published Annotation - Database Name: EC2GO: GO:0004177
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.4.11.1 Published Annotation - Swiss-Prot Accession Number: P68767 Feb 2006
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.1.3 (information transfer; DNA related; DNA recombination) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.2.2 (information transfer; RNA related; transcription related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10694 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790710 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P68767 Published Annotation - Swiss-Prot Accession Number: P68767 Jan 2006
Automated Process Approved db xref GeneID:948791 Published Annotation - Entrez Gene Database ID: 948791
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P68767 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013953 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of proteins, peptides, glyco Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aminopeptidase A/I; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006310 - DNA recombination; GO_process: GO:0006350 - transcription Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77217.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006310 DNA recombination Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004178 (OBSOLETE) leucyl aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004177 aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008235 metalloexopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001654 pepA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001250 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000246 pepA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000216 pepA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000972 pepA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000337 pepA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002065 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004041 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129637 pepA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105058 pepA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104478 pepA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003810 pepA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000146 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003925 pepA_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001128 pepA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008840 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016590 pepA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000407 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004416 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305711 pepA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000462 pepA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000405 pepA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001002 pepA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006955 pepA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004561 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006692 pepA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004404 pepA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004470 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009868 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006041 pepA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007530 PepA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081574 pepA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004942 pepA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005608 pepA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008311 pepA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007343 pepA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004886 pepA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009269 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003524 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009103 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007616 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009304 pepA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010611 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006665 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008423 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006780 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005974 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006115 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005587 pepA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005243 pepA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029443 pepA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005702 pepA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009204 pepA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003936 pepA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004349 pepA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004995 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004976 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004804 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004939 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179102 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004670 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004732 pepA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135354 pepA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001279 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004875 pepA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000100 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000147 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004715 pepA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001926 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008598 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003582 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002152 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003740 pepA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004417 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000524 pepA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003765 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008302 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004011 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289151 pepA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007479 pepA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060622 pepA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000264 pepA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000132 pepA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002812 pepA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004908 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146972 pepA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001300 pepA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008923 pepA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003320 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005108 pepA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009101 pepA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013979 pepA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013222 pepA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006959 pepA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009236 pepA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007684 pepA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004209 pepA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008287 pepA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009171 pepA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006210 pepA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004311 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004273 pepA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005660 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004543 pepA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006527 pepA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008794 pepA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004122 pepA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115065 pepA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086238 pepA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005381 pepA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103759 pepA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004656 pepA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007371 pepA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005604 pepA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000465 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264934 pepA-2 CDS
Person Approved Go view Shigella boydii 227 ADV-0004554 pepA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010238 pepA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006550 pepA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004833 pepA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075815 pepA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090439 pepA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004499 pepA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004827 pepA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002601 VC2501 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000639 pepA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007647 pepA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002750 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001542 carP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002191 carP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001581 pepA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002824 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235645 pepA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008173 pepA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003523 pepA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008428 pepA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003917 pepA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126936 pepA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006353 pepA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005841 pepA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001902 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005830 pepA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004181 pepA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030379 pepA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006584 pepA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000798 pepA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003891 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005006 pepA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007562 pepA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000569 pepA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000664 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004365 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001424 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000369 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21754mutantTn5 InsertionRequest the StrainABE-0013953pepApepA::Tn5KAN-I-SceI at position 1017 in Plus orientation ,+ pKD460Blattner Laboratory
FB21755mutantTn5 InsertionRequest the StrainABE-0013953pepApepA::Tn5KAN-I-SceI at position 1017 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4479440 to 4490951
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013939yjgMCDScomplement44790344479537Downstream
ABE-0013944yjgNCDSforward44797304480926Downstream
ABE-0285694repeat_regionforward44809394480956Downstream
ABE-0013946valSCDScomplement44809824483837Downstream
ABE-0013948holCCDScomplement44838374484280Downstream
ABE-0285695repeat_regionforward44843334484416Downstream
ABE-0013953pepACDScomplement44844404485951Matches
ABE-0285851ytgBCDSforward44860434486099Upstream
ABE-0285825ytgACDSforward44861054486155Upstream
ABE-0013958lptFCDSforward44862184487318Upstream
ABE-0013960lptGCDSforward44873184488400Upstream
ABE-0285696repeat_regionforward44885054488540Upstream
ABE-0013963yjgRCDScomplement44885614490063Upstream
ABE-0013966idnRCDScomplement44901414491139Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.