Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013958 (lptF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013958 showshow history
Names
lptF yjgP JW4218 ECK4254 b4261
Product
membrane component of an ABC superfamily lipopolysaccharide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4486218 4487318 1101 367
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001655
EnteroFam0013958: Trusted threshold=928.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005495 (IPR005495 Permease LptG/LptF-related) Apr 2008
Automated Process Approved IPR030922 (IPR030922 LPS export ABC transporter permease LptF) Jul 2018
Automated Process Approved PF03739 (PF03739 Lipopolysaccharide export system permease LptF/LptG) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005495
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lptF Published Annotation - PubMed ID: 18375759
Reference: Escherichia coli K-12 		Mar 2009
Person Approved synonym ECK4254 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4218 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjgP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b4261 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily lipopolysaccharide transporter Published Annotation - PubMed ID: 18375759
Reference: Escherichia coli K-12 		Mar 2009
Automated Process Approved alternate product name lipopolysaccharide export ABC permease of the LptBFGC export complex Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative transmembrane protein, transport Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013958: Trusted threshold=928.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001655
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005495 Permease LptG/LptF-related Protein Sequence Similarity - InterPro Domain: IPR005495
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR030922 LPS export ABC transporter permease LptF Protein Sequence Similarity - InterPro Domain: IPR030922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03739 Lipopolysaccharide export system permease LptF/LptG Protein Sequence Similarity - PFAM Model Name: PF03739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4 (transport) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013958 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790712 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948795 Published Annotation - Entrez Gene Database ID: 948795
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AF98 Published Annotation - Swiss-Prot Accession Number: P0AF98 Jan 2006
Automated Process Approved db xref EcoGene:EG12535 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AF98 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77218.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005495
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000638 CDS
Member
Person Approved Go view EnteroFams ADX-0001655 lptF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001249 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000654 lptF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000605 lptF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000691 lptF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000507 lptF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002066 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004040 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003809 lptF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000147 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003924 lptF_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001129 lptF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008839 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016591 lptF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000408 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004417 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305708 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000463 yjgP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000406 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001000 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006953 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004562 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006690 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004405 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004468 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009867 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006039 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009137 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081576 lptF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004944 lptF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005610 yjgP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008309 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007345 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004887 yjgP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009270 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009105 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007618 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009306 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007680 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010613 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006663 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008425 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006782 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005976 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006117 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005589 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005245 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029444 yjgP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005700 lptF_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009205 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004893 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003937 yjgP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004350 yjgP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004996 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004977 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004805 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004941 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004671 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004734 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135355 yjgP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001281 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004877 yjgP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000099 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000149 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004716 yjgP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001925 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008597 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003583 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002151 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003741 yjgP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004415 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000525 yjgP CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003764 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008303 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004012 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289152 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060623 yjgP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000280 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001321 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002813 yjgP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004909 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146967 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008924 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003318 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005110 yjgP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009102 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013984 yjgP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013226 yjgP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006958 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009237 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007683 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004210 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007185 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008288 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009172 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006209 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004312 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004274 yjgP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005661 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004544 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006526 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008795 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004123 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115068 yjgP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086239 yjgP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005383 yjgP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103762 yjgP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004655 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007370 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005605 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000464 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264935 CDS
Person Approved Go view Shigella boydii 227 ADV-0004553 yjgP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004834 yjgP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075814 yjgP CDS
Person Approved Go view Shigella flexneri 301 ABT-0090438 yjgP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004498 yjgP CDS
Person Approved Go view Shigella sonnei 046 ADD-0004828 yjgP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002600 VC2500 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007644 yjgP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002749 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001547 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002192 lptF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001580 yjgP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002825 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235646 yjgP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008174 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003522 yjgP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008429 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003918 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126929 yjgP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006354 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005842 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005831 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004182 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030380 yjgP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006585 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000799 yjgP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003890 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005007 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007561 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000570 yjgP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000665 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004364 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001430 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000368 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4481218 to 4492318
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013946valSCDScomplement44809824483837Upstream
ABE-0013948holCCDScomplement44838374484280Upstream
ABE-0285695repeat_regionforward44843334484416Upstream
ABE-0013953pepACDScomplement44844404485951Upstream
ABE-0285851ytgBCDSforward44860434486099Upstream
ABE-0285825ytgACDSforward44861054486155Upstream
ABE-0013958lptFCDSforward44862184487318Matches
ABE-0013960lptGCDSforward44873184488400Overlaps Downstream
ABE-0285696repeat_regionforward44885054488540Downstream
ABE-0013963yjgRCDScomplement44885614490063Downstream
ABE-0013966idnRCDScomplement44901414491139Downstream
ABE-0013969idnTCDScomplement44912064492525Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.