Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013960 (lptG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013960 showshow history
Names
lptG yjgQ JW5760 ECK4255 b4262
Product
membrane component of an ABC superfamily lipopolysaccharide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4487318 4488400 1083 361
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001656
EnteroFam0013960: Trusted threshold=960.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005495 (IPR005495 Permease LptG/LptF-related) Apr 2008
Automated Process Approved IPR030923 (IPR030923 LPS export ABC transporter permease LptG) Jul 2018
Automated Process Approved PF03739 (PF03739 Lipopolysaccharide export system permease LptF/LptG) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005495
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lptG Published Annotation - PubMed ID: 18375759
Reference: Escherichia coli K-12 		Mar 2009
Person Approved synonym ECK4255 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5760 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjgQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b4262 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily lipopolysaccharide transporter Experimental - PubMed ID: 18375759
Reference: Escherichia coli K-12 		Mar 2009
Automated Process Approved alternate product name lipopolysaccharide export ABC permease of the LptBFGC export complex Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative transmembrane protein, transport Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013960: Trusted threshold=960.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001656
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005495 Permease LptG/LptF-related Protein Sequence Similarity - InterPro Domain: IPR005495
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03739 Lipopolysaccharide export system permease LptF/LptG Protein Sequence Similarity - PFAM Model Name: PF03739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR030923 LPS export ABC transporter permease LptG Protein Sequence Similarity - InterPro Domain: IPR030923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADC6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945324 Published Annotation - Entrez Gene Database ID: 945324
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ADC6 Published Annotation - Swiss-Prot Accession Number: P0ADC6 Jan 2006
Automated Process Approved db xref GI:87082400 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013960 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77219.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005495
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001656 lptG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001248 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000574 lptG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000644 lptG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000681 lptG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001169 lptG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002067 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004039 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003808 lptG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000148 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003923 lptG_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001130 lptG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008838 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016592 lptG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000409 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004418 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305705 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000464 ampH1 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000407 yjgQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000999 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006952 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004563 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006689 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004406 yjgQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004467 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009866 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006038 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009138 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081577 lptG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004945 lptG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005611 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008308 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007346 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004888 yjgQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009271 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009106 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007619 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009307 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007679 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010614 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006662 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008426 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006783 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005977 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006118 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005590 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005246 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029445 yjgQ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005697 lptG_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009206 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004894 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003938 yjgQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004351 yjgQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004997 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004978 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004806 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004942 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179105 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004672 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004735 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135356 yjgQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001282 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004878 yjgQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000098 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000150 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004717 yjgQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001924 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008596 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003584 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002150 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003742 yjgQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004414 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000526 yjgQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003763 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008304 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004013 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289153 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007482 yjgQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060624 yjgQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000281 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001322 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002814 yjgQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004910 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146965 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001302 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008925 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003317 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005111 yjgQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009103 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013987 yjgQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013229 yjgQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006957 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009238 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007682 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004211 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007186 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008289 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009173 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006208 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004313 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004275 yjgQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005662 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004545 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006525 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008796 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004124 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115069 yjgQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086240 yjgQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005384 yjgQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103765 yjgQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004654 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007369 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005606 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000463 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264936 CDS
Person Approved Go view Shigella boydii 227 ADV-0004552 yjgQ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010235 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004835 yjgQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075813 yjgQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0090437 yjgQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004497 yjgQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004829 yjgQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002599 VC2499 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000637 yjgQ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007642 yjgQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002748 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001550 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002193 lptG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001579 yjgQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002826 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235653 yjgQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008175 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003521 yjgQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008430 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003919 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126922 yjgQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006355 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005843 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005832 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004183 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030381 yjgQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006586 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000800 yjgQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003889 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005008 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007560 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000571 yjgQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000666 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004363 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001433 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000367 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22223mutantTn5 InsertionRequest the StrainABE-0013960lptGyjgQ::Tn5KAN-I-SceI at position 1066 in Plus orientation ,+ pKD460Blattner Laboratory
FB22951mutantTn5 InsertionRequest the StrainABE-0013960lptGyjgQ::Tn5(KAN-I-SceI) at position 1066 in Plus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4482318 to 4493400
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013946valSCDScomplement44809824483837Upstream
ABE-0013948holCCDScomplement44838374484280Upstream
ABE-0285695repeat_regionforward44843334484416Upstream
ABE-0013953pepACDScomplement44844404485951Upstream
ABE-0285851ytgBCDSforward44860434486099Upstream
ABE-0285825ytgACDSforward44861054486155Upstream
ABE-0013958lptFCDSforward44862184487318Overlaps Upstream
ABE-0013960lptGCDSforward44873184488400Matches
ABE-0285696repeat_regionforward44885054488540Downstream
ABE-0013963yjgRCDScomplement44885614490063Downstream
ABE-0013966idnRCDScomplement44901414491139Downstream
ABE-0013969idnTCDScomplement44912064492525Downstream
ABE-0013971idnOCDScomplement44925874493351Downstream
ABE-0013975idnDCDScomplement44933754494406Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.