Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014087 (yjhG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014087 showshow history
Names
yjhG JW4259 ECK4286 b4297
Product
KpLE2 phage-like element; predicted dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4522127 4524094 1968 656
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000581 (IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase) Apr 2008
Automated Process Approved IPR017798 (IPR017798 D-xylonate dehydratase YjhG/YagF) Jul 2018
Automated Process Approved IPR037237 (IPR037237 IlvD/EDD, N-terminal domain) Jul 2018
Automated Process Approved PF00920 (PF00920 Dehydratase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050401 xylonate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017798
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yjhG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4286 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4259 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4297 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product KpLE2 phage-like element; predicted dehydratase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative dehydratase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase Protein Sequence Similarity - InterPro Domain: IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037237 IlvD/EDD, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR037237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017798 D-xylonate dehydratase YjhG/YagF Protein Sequence Similarity - InterPro Domain: IPR017798
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00920 Dehydratase family Protein Sequence Similarity - PFAM Model Name: PF00920
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 4.2.1.82 Published Annotation - Database Name: EC2GO: GO:0050401
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 4.2.1.9 Protein Sequence Similarity - InterPro Domain: IPR000581
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12549 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946829 Published Annotation - Entrez Gene Database ID: 946829
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39358 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39358 Published Annotation - Swiss-Prot Accession Number: P39358 Jan 2005
Automated Process Approved db xref ASAP:ABE-0014087 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367371 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative dehydratase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77253.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050401 xylonate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017798
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004169 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005176 yagF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005498 yagF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008114 yagF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0005285 yagF CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001805 ilvD_3 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003972 yjhG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4517127 to 4529094
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0234214KpLE2prophageforward44965404536609Contains
ABE-0014070fecRCDScomplement45167644517717Downstream
ABE-0014072fecICDScomplement45177144518235Downstream
ABE-0285747ykiECDSforward45183724518440Downstream
ABE-0014074mobile_elementforward45184724519239Downstream
ABE-0014077insA-7CDSforward45185274518802Downstream
ABE-0285084insB-7_1CDSpforward45187214519014Downstream
ABE-0285109insB-7pseudogeneforward45187214519224Downstream
ABE-0285085insB-7_2CDSpforward45190154519224Downstream
ABE-0014079yjhUCDScomplement45193384520324Downstream
ABE-0014084yjhFCDScomplement45206714522020Downstream
ABE-0014087yjhGCDScomplement45221274524094Matches
ABE-0014089yjhHCDScomplement45241054525010Upstream
ABE-0014092yjhICDScomplement45250154525803Upstream
ABE-0014094sgcRCDScomplement45261064526888Upstream
ABE-0014097sgcECDScomplement45269054527537Upstream
ABE-0014100sgcACDScomplement45275494527980Upstream
ABE-0285202ryjBncRNAforward45279774528066Upstream
ABE-0014102sgcQCDScomplement45281114528917Upstream
ABE-0014105sgcCCDScomplement45289304530243Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.