Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014089 (yjhH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014089 showshow history
Names
yjhH JW5775 ECK4287 b4298
Product
KpLE2 phage-like element; predicted lyase/synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4524105 4525010 906 302
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002220 (IPR002220 DapA-like) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF00701 (PF00701 Dihydrodipicolinate synthetase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yjhH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4287 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5775 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4298 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product KpLE2 phage-like element; predicted lyase/synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name KpLE2 phage-like element; putative synthase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative lyase/synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002220 DapA-like Protein Sequence Similarity - InterPro Domain: IPR002220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00701 Dihydrodipicolinate synthetase family Protein Sequence Similarity - PFAM Model Name: PF00701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 4.2.1.- Protein Sequence Similarity - InterPro Domain: IPR002220
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12550 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948825 Published Annotation - Entrez Gene Database ID: 948825
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082415 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39359 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014089 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39359 Published Annotation - Swiss-Prot Accession Number: P39359 Jan 2005
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative lyase/synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77254.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004329 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004677 yagE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004027 yagE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002899 yjhH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004425 yagE CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001806 yagE_2 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0004422 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003973 yjhH CDS
Person Uncurated Go view Escherichia coli K-12 W3110 ADY-0004394 yjhH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22232mutantTn5 InsertionRequest the StrainABE-0014089yjhHyjhH::Tn5KAN-I-SceI at position 79 in Plus orientation ,+ pKD460Blattner Laboratory
FB22963mutantTn5 InsertionRequest the StrainABE-0014089yjhHyjhH::Tn5(KAN-I-SceI) at position 79 in Plus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4519105 to 4530010
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0234214KpLE2prophageforward44965404536609Contains
ABE-0014074mobile_elementforward45184724519239Downstream
ABE-0285109insB-7pseudogeneforward45187214519224Downstream
ABE-0285085insB-7_2CDSpforward45190154519224Downstream
ABE-0014079yjhUCDScomplement45193384520324Downstream
ABE-0014084yjhFCDScomplement45206714522020Downstream
ABE-0014087yjhGCDScomplement45221274524094Downstream
ABE-0014089yjhHCDScomplement45241054525010Matches
ABE-0014092yjhICDScomplement45250154525803Upstream
ABE-0014094sgcRCDScomplement45261064526888Upstream
ABE-0014097sgcECDScomplement45269054527537Upstream
ABE-0014100sgcACDScomplement45275494527980Upstream
ABE-0285202ryjBncRNAforward45279774528066Upstream
ABE-0014102sgcQCDScomplement45281114528917Upstream
ABE-0014105sgcCCDScomplement45289304530243Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.