Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014161 (gntP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014161 showshow history
Names
gntP yjiB JW4284 ECK4312 b4321
Product
fructuronate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4549953 4551296 1344 448
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003474 (IPR003474 Gluconate transporter) Apr 2008
Automated Process Approved PF02447 (PF02447 GntP family permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0035429 gluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gntP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4284 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjiB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4312 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4321 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fructuronate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name gluconate transport system permease 3 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name gluconate transport protein, GNT III system (GntP family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF02447 GntP family permease Protein Sequence Similarity - PFAM Model Name: PF02447
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003474 Gluconate transporter Protein Sequence Similarity - InterPro Domain: IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.8 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Gluconate:H+ Symporter (GntP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.69 (transport; substrate; gluconate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014161 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12563 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC94 Published Annotation - Swiss-Prot Accession Number: P0AC94 Jan 2006
Automated Process Approved db xref GeneID:948848 Published Annotation - Entrez Gene Database ID: 948848
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790776 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC94 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note gluconate transport system permease 3; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77277.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0035429 gluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006929 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003607 gntP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003880 gntP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008901 gntP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003717 gntP CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000952 gntP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006886 gntP CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006681 gntP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004394 CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0010609 gntP pseudogene
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005951 gntP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007416 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081617 gntP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005010 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005724 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008690 gntP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007393 gntP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009355 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003565 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009148 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007661 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008165 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007635 gntP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010657 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006618 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008469 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006826 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006022 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006164 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005637 gntP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005295 gntP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029490 gntP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009235 gntP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0005063 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004419 gntP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005103 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0005052 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004861 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0005043 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0004699 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004839 gntP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135400 gntP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001323 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075774 gntP CDS
Person Approved Go view Shigella flexneri 301 ABT-0090410 gntP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004467 gntP CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003057 gntP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001587 gntP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001164 gntP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000299 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242628 gntP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004037 gntP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006632 gntP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002569 gntP CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117813 gntP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004938 gntP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005079 gntP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000689 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008391 gntP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006263 gntP CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033198 gntP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004479 gntP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003856 gntP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004636 gntP CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003396 gntP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004084 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000895 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21771mutantTn5 InsertionRequest the StrainABE-0014161gntPgntP::Tn5KAN-I-SceI at position 728 in Plus orientation ,- pKD465Blattner Laboratory
FB21772mutantTn5 InsertionRequest the StrainABE-0014161gntPgntP::Tn5KAN-I-SceI at position 728 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4544953 to 4556296
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014149fimCCDSforward45443044545029Downstream
ABE-0014151fimDCDSforward45450964547732Downstream
ABE-0014153fimFCDSforward45477424548272Downstream
ABE-0014155fimGCDSforward45482854548788Downstream
ABE-0014157fimHCDSforward45488084549710Downstream
ABE-0285699repeat_regionforward45497834549818Downstream
ABE-0014161gntPCDScomplement45499534551296Matches
ABE-0014173uxuACDSforward45516364552820Upstream
ABE-0014175uxuBCDSforward45529014554361Upstream
ABE-0285700repeat_regionforward45545054554538Upstream
ABE-0014179uxuRCDSforward45545764555349Upstream
ABE-0014181yjiCCDScomplement45554904556320Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.