Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014173 (uxuA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014173 showshow history
Names
uxuA JW4285 ECK4313 b4322
Product
mannonate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4551636 4552820 1185 395
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001657
EnteroFam0014173: Trusted threshold=1091.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004628 (IPR004628 Mannonate dehydratase) Apr 2008
Automated Process Approved IPR036237 (IPR036237 Xylose isomerase-like superfamily) Jul 2018
Automated Process Approved PF03786 (PF03786 D-mannonate dehydratase (UxuA)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006064 glucuronate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004628
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008927 mannonate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004628
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name uxuA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW4285 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4313 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4322 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product mannonate hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name mannonate hydrolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014173: Trusted threshold=1091.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001657
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036237 Xylose isomerase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03786 D-mannonate dehydratase (UxuA) Protein Sequence Similarity - PFAM Model Name: PF03786
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004628 Mannonate dehydratase Protein Sequence Similarity - InterPro Domain: IPR004628
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.8 Published Annotation - Swiss-Prot Accession Number: P24215 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947082 Published Annotation - Entrez Gene Database ID: 947082
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P24215 Published Annotation - Swiss-Prot Accession Number: P24215 Jan 2005
Automated Process Approved db xref EcoGene:EG11066 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24215 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790778 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77278.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006064 glucuronate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004628
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008927 mannonate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004628
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001657 uxuA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001979 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001995 uxuA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001799 uxuA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001643 uxuA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001995 uxuA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000404 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002990 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003633 uxuA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001171 uxuA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009317 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018384 uxuA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000053 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003631 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000951 uxuA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006884 uxuA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004710 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006680 uxuA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004429 uxuA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004393 uxuA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009856 uxuA pseudogene
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005950 uxuA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007418 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081618 uxuA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005011 uxuA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005726 uxuA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008689 uxuA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007394 uxuA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004932 uxuA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009356 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003566 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009149 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007662 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008166 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007634 uxuA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010658 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006617 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008470 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006827 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006023 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006165 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005638 uxuA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005296 uxuA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029491 uxuA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005543 uxuA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009236 uxuA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0005064 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004420 uxuA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005105 uxuA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0005050 uxuA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004863 uxuA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005044 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179253 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004700 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004840 uxuA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135401 uxuA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001324 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005027 uxuA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001575 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002150 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002613 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000950 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005495 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002908 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000411 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003033 uxuA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000958 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003853 uxuA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000301 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000544 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288438 uxuA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006791 uxuA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061338 uxuA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002080 uxuA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000260 uxuA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001579 uxuA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005635 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137167 uxuA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007474 uxuA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004715 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003598 uxuA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007732 uxuA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009713 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009188 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007371 uxuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007740 uxuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006701 uxuA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005699 uxuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006162 uxuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006861 uxuA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007745 uxuA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005327 uxuA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003035 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003002 uxuA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003930 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007899 uxuA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007171 uxuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007388 uxuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007309 uxuA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112031 uxuA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084775 uxuA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003801 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099768 uxuA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006101 uxuA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006188 uxuA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004737 uxuA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002508 CDS
Person Approved Go view Shigella boydii 227 ADV-0004767 uxuA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010211 uxuA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075773 uxuA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090409 uxuA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004466 uxuA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004867 uxuA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001244 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004348 uxuA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001241 uxuA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003490 uxuA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001159 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237391 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005620 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001216 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005388 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002100 uxuA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119485 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006147 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004645 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005304 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005195 uxuA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032643 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005343 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003239 uxuA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002897 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006396 uxuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006685 uxuA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001387 uxuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001669 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003297 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016847 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003042 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4546636 to 4557820
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014151fimDCDSforward45450964547732Upstream
ABE-0014153fimFCDSforward45477424548272Upstream
ABE-0014155fimGCDSforward45482854548788Upstream
ABE-0014157fimHCDSforward45488084549710Upstream
ABE-0285699repeat_regionforward45497834549818Upstream
ABE-0014161gntPCDScomplement45499534551296Upstream
ABE-0014173uxuACDSforward45516364552820Matches
ABE-0014175uxuBCDSforward45529014554361Downstream
ABE-0285700repeat_regionforward45545054554538Downstream
ABE-0014179uxuRCDSforward45545764555349Downstream
ABE-0014181yjiCCDScomplement45554904556320Downstream
ABE-0285826ytiCCDSforward45565744556675Downstream
ABE-0285827ytiDCDSforward45566544556797Downstream
ABE-0285774idlPCDSforward45569134556996Downstream
ABE-0014190iraDCDSforward45569934557385Downstream
ABE-0014192hypTCDScomplement45573784558289Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.