Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014221 (mdtM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014221 showshow history
Names
mdtM JW4300 ECK4328 yjiO b4337
Product
multidrug efflux system protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4567287 4568519 1233 411
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name mdtM Published Annotation in EcoGene - EG Number: EG12576
Reference: Escherichia coli K-12 MG1655 		Apr 2009
Person Approved synonym ECK4328 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4300 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yjiO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b4337 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product multidrug efflux system protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name multidrug transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12576 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948861 Published Annotation - Entrez Gene Database ID: 948861
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39386 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39386 Published Annotation - Swiss-Prot Accession Number: P39386 Jan 2005
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77293.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006933 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003376 mdtM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003617 mdtM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003319 mdtM CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003855 mdtM_3 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001183 mdtM_1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006865 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006659 mdtM CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004371 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009836 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005929 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009444 MdtM CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005746 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008667 mdtM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007412 mdtM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009374 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003588 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009171 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007684 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008188 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007612 mdtM CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010681 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006594 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008492 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006850 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006046 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006187 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005661 mdtM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005320 mdtM CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029511 yjiO CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009253 mdtM CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0005080 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004435 yjiO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005124 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0005070 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005060 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004717 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004875 mdtM CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135421 yjiO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001347 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004817 yjiO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009007 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003211 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005156 yjiO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009158 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014113 yjiO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013346 yjiO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006920 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009276 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007642 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004259 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007232 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008336 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009217 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006156 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005709 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004589 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006483 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008835 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004162 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115163 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086294 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005433 yjiO CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103867 yjiO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004593 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007303 CDS
Person Approved Go view Shigella boydii 227 ADV-0004783 yjiO CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010186 mdtM CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005216 yjiO CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001798 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000262 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4562287 to 4573519
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014206yjiJCDScomplement45614974562675Downstream
ABE-0014209yjiKCDScomplement45627434563603Downstream
ABE-0285711ytiACDScomplement45636684563925Downstream
ABE-0014212yjiLCDScomplement45639224564689Downstream
ABE-0014214yjiMCDScomplement45646994565850Downstream
ABE-0014219yjiNCDScomplement45659664567246Downstream
ABE-0014221mdtMCDScomplement45672874568519Matches
ABE-0285852ytiECDScomplement45686924568727Upstream
ABE-0014227yjiP_1CDSpforward45689984569309Upstream
ABE-0285116rpnDpseudogeneforward45689984569918Upstream
ABE-0014229yjiP_2CDSpforward45693584569918Upstream
ABE-0285701repeat_regionforward45699464570044Upstream
ABE-0014232yjiRCDScomplement45701624571574Upstream
ABE-0014236yjiSCDSforward45717514571915Upstream
ABE-0014239yjiTpseudogeneforward45724144573916Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.